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Cluster: HRGMv2_3896_CGC46

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3896_62 HRGMv2_3896_62_2 2930 6211 - 1.B.14.6.13
pfam HRGMv2_3896_62 HRGMv2_3896_62_3 6245 7693 - DUF4957 | DUF4992 | DUF5123
pfam HRGMv2_3896_62 HRGMv2_3896_62_4 7737 8657 - AP_endonuc_2
CAZyme HRGMv2_3896_62 HRGMv2_3896_62_5 8787 10106 - CE19
CAZyme HRGMv2_3896_62 HRGMv2_3896_62_6 10152 12527 - CBM67 | GH78
CAZyme HRGMv2_3896_62 HRGMv2_3896_62_7 12564 16028 - GH142 | GH143
CAZyme HRGMv2_3896_62 HRGMv2_3896_62_8 16025 16966 - GH43_18
CAZyme HRGMv2_3896_62 HRGMv2_3896_62_9 16970 18925 - GH141
Gene ID: HRGMv2_3896_62_2
Type: TC
Location: 2930 - 6211 (-)
Gene ID: HRGMv2_3896_62_3
Type: pfam
Location: 6245 - 7693 (-)
Gene ID: HRGMv2_3896_62_4
Type: pfam
Location: 7737 - 8657 (-)
Gene ID: HRGMv2_3896_62_5
Type: CAZyme
Location: 8787 - 10106 (-)
Gene ID: HRGMv2_3896_62_6
Type: CAZyme
Location: 10152 - 12527 (-)
Gene ID: HRGMv2_3896_62_7
Type: CAZyme
Location: 12564 - 16028 (-)
Gene ID: HRGMv2_3896_62_8
Type: CAZyme
Location: 16025 - 16966 (-)
Gene ID: HRGMv2_3896_62_9
Type: CAZyme
Location: 16970 - 18925 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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