dbCAN Logo

Cluster: HRGMv2_3896_CGC45

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3896_57 HRGMv2_3896_57_2 2863 3798 + 2.A.115.1.1
pfam HRGMv2_3896_57 HRGMv2_3896_57_3 3837 4523 + SLFN_AlbA_2
pfam HRGMv2_3896_57 HRGMv2_3896_57_4 4652 5863 - Iso_dh
TC HRGMv2_3896_57 HRGMv2_3896_57_5 6004 6861 - 1.A.30.1.4
pfam HRGMv2_3896_57 HRGMv2_3896_57_6 7060 8331 + PagL
CAZyme HRGMv2_3896_57 HRGMv2_3896_57_7 8818 10452 + GT83
CAZyme HRGMv2_3896_57 HRGMv2_3896_57_8 10445 11185 + GT2
TC HRGMv2_3896_57 HRGMv2_3896_57_9 11201 11824 + 2.A.123.4.1
pfam HRGMv2_3896_57 HRGMv2_3896_57_10 11821 12828 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | GDP_Man_Dehyd
TC HRGMv2_3896_57 HRGMv2_3896_57_11 12994 13908 + 1.A.23.2.2
pfam HRGMv2_3896_57 HRGMv2_3896_57_12 14322 15248 - EamA | EamA
TC HRGMv2_3896_57 HRGMv2_3896_57_13 15404 15979 - 2.A.51.1.6
TC HRGMv2_3896_57 HRGMv2_3896_57_14 16021 16665 - 2.A.51.1.6
peptidase HRGMv2_3896_57 HRGMv2_3896_57_15 16719 20537 - C56.972
CAZyme HRGMv2_3896_57 HRGMv2_3896_57_16 20874 22556 - GH13_46
Gene ID: HRGMv2_3896_57_2
Type: TC
Location: 2863 - 3798 (+)
Gene ID: HRGMv2_3896_57_3
Type: pfam
Location: 3837 - 4523 (+)
Gene ID: HRGMv2_3896_57_4
Type: pfam
Location: 4652 - 5863 (-)
Gene ID: HRGMv2_3896_57_5
Type: TC
Location: 6004 - 6861 (-)
Gene ID: HRGMv2_3896_57_6
Type: pfam
Location: 7060 - 8331 (+)
Gene ID: HRGMv2_3896_57_7
Type: CAZyme
Location: 8818 - 10452 (+)
Gene ID: HRGMv2_3896_57_8
Type: CAZyme
Location: 10445 - 11185 (+)
Gene ID: HRGMv2_3896_57_9
Type: TC
Location: 11201 - 11824 (+)
Gene ID: HRGMv2_3896_57_10
Type: pfam
Location: 11821 - 12828 (+)
Gene ID: HRGMv2_3896_57_11
Type: TC
Location: 12994 - 13908 (+)
Gene ID: HRGMv2_3896_57_12
Type: pfam
Location: 14322 - 15248 (-)
Gene ID: HRGMv2_3896_57_13
Type: TC
Location: 15404 - 15979 (-)
Gene ID: HRGMv2_3896_57_14
Type: TC
Location: 16021 - 16665 (-)
Gene ID: HRGMv2_3896_57_15
Type: peptidase
Location: 16719 - 20537 (-)
Gene ID: HRGMv2_3896_57_16
Type: CAZyme
Location: 20874 - 22556 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3896_57_5 vegetarian > vegan 1.07857 0.02258

🧭 Explore Read Mapping of CGC

← Back to Cluster List