Cluster: HRGMv2_3896_CGC43
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3896
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3896_50 | HRGMv2_3896_50_10 | 10323 | 12773 | + | 3.A.12.1.1 |
| pfam | HRGMv2_3896_50 | HRGMv2_3896_50_11 | 12856 | 13464 | + | LolA | LolA_2 |
| pfam | HRGMv2_3896_50 | HRGMv2_3896_50_12 | 13498 | 15003 | + | DUF5687 |
| TC | HRGMv2_3896_50 | HRGMv2_3896_50_13 | 15139 | 17643 | - | 9.A.8.1.6 |
| pfam | HRGMv2_3896_50 | HRGMv2_3896_50_14 | 17816 | 18436 | - | VWA |
| STP | HRGMv2_3896_50 | HRGMv2_3896_50_15 | 18552 | 19673 | + | Sigma70_r4_2 |
| CAZyme | HRGMv2_3896_50 | HRGMv2_3896_50_16 | 19728 | 20711 | + | GH179 |
Gene ID: HRGMv2_3896_50_10
Type: TC
Location: 10323 - 12773 (+)
Type: TC
Location: 10323 - 12773 (+)
Gene ID: HRGMv2_3896_50_11
Type: pfam
Location: 12856 - 13464 (+)
Type: pfam
Location: 12856 - 13464 (+)
Gene ID: HRGMv2_3896_50_12
Type: pfam
Location: 13498 - 15003 (+)
Type: pfam
Location: 13498 - 15003 (+)
Gene ID: HRGMv2_3896_50_13
Type: TC
Location: 15139 - 17643 (-)
Type: TC
Location: 15139 - 17643 (-)
Gene ID: HRGMv2_3896_50_14
Type: pfam
Location: 17816 - 18436 (-)
Type: pfam
Location: 17816 - 18436 (-)
Gene ID: HRGMv2_3896_50_15
Type: STP
Location: 18552 - 19673 (+)
Type: STP
Location: 18552 - 19673 (+)
Gene ID: HRGMv2_3896_50_16
Type: CAZyme
Location: 19728 - 20711 (+)
Type: CAZyme
Location: 19728 - 20711 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.