Cluster: HRGMv2_3896_CGC42
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3896
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3896_49 | HRGMv2_3896_49_7 | 8644 | 12111 | + | 3.A.5.1.1 |
| pfam | HRGMv2_3896_49 | HRGMv2_3896_49_8 | 12448 | 12855 | - | DUF1232 |
| NULL(UNKNOWN) | HRGMv2_3896_49 | HRGMv2_3896_49_9 | 12875 | 13312 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3896_49 | HRGMv2_3896_49_10 | 14044 | 15513 | + | 2.A.102.4.10 |
| pfam | HRGMv2_3896_49 | HRGMv2_3896_49_11 | 15850 | 17700 | + | SLFN_AlbA_2 | HATPase_c_4 | Fic-like_C |
| pfam | HRGMv2_3896_49 | HRGMv2_3896_49_12 | 17735 | 20590 | + | UvrA_DNA-bind | UvrA_inter |
| CAZyme | HRGMv2_3896_49 | HRGMv2_3896_49_13 | 20587 | 21480 | + | GT2 |
Gene ID: HRGMv2_3896_49_7
Type: TC
Location: 8644 - 12111 (+)
Type: TC
Location: 8644 - 12111 (+)
Gene ID: HRGMv2_3896_49_8
Type: pfam
Location: 12448 - 12855 (-)
Type: pfam
Location: 12448 - 12855 (-)
Gene ID: HRGMv2_3896_49_9
Type:
Location: 12875 - 13312 (-)
Type:
Location: 12875 - 13312 (-)
Gene ID: HRGMv2_3896_49_10
Type: TC
Location: 14044 - 15513 (+)
Type: TC
Location: 14044 - 15513 (+)
Gene ID: HRGMv2_3896_49_11
Type: pfam
Location: 15850 - 17700 (+)
Type: pfam
Location: 15850 - 17700 (+)
Gene ID: HRGMv2_3896_49_12
Type: pfam
Location: 17735 - 20590 (+)
Type: pfam
Location: 17735 - 20590 (+)
Gene ID: HRGMv2_3896_49_13
Type: CAZyme
Location: 20587 - 21480 (+)
Type: CAZyme
Location: 20587 - 21480 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.