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Cluster: HRGMv2_3896_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3896_45 HRGMv2_3896_45_7 5803 6837 - GH43_5
CAZyme HRGMv2_3896_45 HRGMv2_3896_45_8 6871 8493 - GH43_4
pfam HRGMv2_3896_45 HRGMv2_3896_45_9 8527 10317 - Big_3
pfam HRGMv2_3896_45 HRGMv2_3896_45_10 10368 12119 - SusD_RagB | SusD-like_3
TC HRGMv2_3896_45 HRGMv2_3896_45_11 12186 15416 - 1.B.14.6.1
TF HRGMv2_3896_45 HRGMv2_3896_45_12 15660 18632 - HTH_AraC
CAZyme HRGMv2_3896_45 HRGMv2_3896_45_13 19204 21879 + GH77
CAZyme HRGMv2_3896_45 HRGMv2_3896_45_14 22207 24339 + GH97
CAZyme HRGMv2_3896_45 HRGMv2_3896_45_15 24716 26704 + GH13_14
Gene ID: HRGMv2_3896_45_7
Type: CAZyme
Location: 5803 - 6837 (-)
Gene ID: HRGMv2_3896_45_8
Type: CAZyme
Location: 6871 - 8493 (-)
Gene ID: HRGMv2_3896_45_9
Type: pfam
Location: 8527 - 10317 (-)
Gene ID: HRGMv2_3896_45_10
Type: pfam
Location: 10368 - 12119 (-)
Gene ID: HRGMv2_3896_45_11
Type: TC
Location: 12186 - 15416 (-)
Gene ID: HRGMv2_3896_45_12
Type: TF
Location: 15660 - 18632 (-)
Gene ID: HRGMv2_3896_45_13
Type: CAZyme
Location: 19204 - 21879 (+)
Gene ID: HRGMv2_3896_45_14
Type: CAZyme
Location: 22207 - 24339 (+)
Gene ID: HRGMv2_3896_45_15
Type: CAZyme
Location: 24716 - 26704 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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