Cluster: HRGMv2_3896_CGC38
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3896
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3896_42 | HRGMv2_3896_42_4 | 3925 | 5373 | + | 9.A.25.1.1 |
| pfam | HRGMv2_3896_42 | HRGMv2_3896_42_5 | 5377 | 6273 | + | GldL_N |
| TC | HRGMv2_3896_42 | HRGMv2_3896_42_6 | 6337 | 7893 | + | 9.A.25.1.1 |
| pfam | HRGMv2_3896_42 | HRGMv2_3896_42_7 | 7930 | 8991 | + | GldN |
| pfam | HRGMv2_3896_42 | HRGMv2_3896_42_8 | 9356 | 9994 | + | OMP_b-brl | OMP_b-brl_2 |
| CAZyme | HRGMv2_3896_42 | HRGMv2_3896_42_9 | 10001 | 12442 | - | GH2 |
| CAZyme | HRGMv2_3896_42 | HRGMv2_3896_42_10 | 12493 | 15162 | - | CBM57 | GH2 |
| CAZyme | HRGMv2_3896_42 | HRGMv2_3896_42_11 | 15200 | 17521 | - | GH88 | PL38 |
| NULL(UNKNOWN) | HRGMv2_3896_42 | HRGMv2_3896_42_12 | 17541 | 18089 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3896_42 | HRGMv2_3896_42_13 | 18128 | 19780 | - | 8.A.46.1.4 |
| TC | HRGMv2_3896_42 | HRGMv2_3896_42_14 | 19794 | 22925 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_3896_42_4
Type: TC
Location: 3925 - 5373 (+)
Type: TC
Location: 3925 - 5373 (+)
Gene ID: HRGMv2_3896_42_5
Type: pfam
Location: 5377 - 6273 (+)
Type: pfam
Location: 5377 - 6273 (+)
Gene ID: HRGMv2_3896_42_6
Type: TC
Location: 6337 - 7893 (+)
Type: TC
Location: 6337 - 7893 (+)
Gene ID: HRGMv2_3896_42_7
Type: pfam
Location: 7930 - 8991 (+)
Type: pfam
Location: 7930 - 8991 (+)
Gene ID: HRGMv2_3896_42_8
Type: pfam
Location: 9356 - 9994 (+)
Type: pfam
Location: 9356 - 9994 (+)
Gene ID: HRGMv2_3896_42_9
Type: CAZyme
Location: 10001 - 12442 (-)
Type: CAZyme
Location: 10001 - 12442 (-)
Gene ID: HRGMv2_3896_42_10
Type: CAZyme
Location: 12493 - 15162 (-)
Type: CAZyme
Location: 12493 - 15162 (-)
Gene ID: HRGMv2_3896_42_11
Type: CAZyme
Location: 15200 - 17521 (-)
Type: CAZyme
Location: 15200 - 17521 (-)
Gene ID: HRGMv2_3896_42_12
Type:
Location: 17541 - 18089 (-)
Type:
Location: 17541 - 18089 (-)
Gene ID: HRGMv2_3896_42_13
Type: TC
Location: 18128 - 19780 (-)
Type: TC
Location: 18128 - 19780 (-)
Gene ID: HRGMv2_3896_42_14
Type: TC
Location: 19794 - 22925 (-)
Type: TC
Location: 19794 - 22925 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.