Cluster: HRGMv2_3896_CGC33
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3896
- CGC Family ID: CGCFAM_02375
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3896_35 | HRGMv2_3896_35_1 | 943 | 3291 | + | GH3 |
| NULL(UNKNOWN) | HRGMv2_3896_35 | HRGMv2_3896_35_2 | 3385 | 5643 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | HRGMv2_3896_35 | HRGMv2_3896_35_3 | 5705 | 7321 | + | S09.UPW |
| CAZyme | HRGMv2_3896_35 | HRGMv2_3896_35_4 | 7760 | 10069 | + | GH3 |
| CAZyme | HRGMv2_3896_35 | HRGMv2_3896_35_5 | 10126 | 13629 | + | CBM67 | GH78 |
| pfam | HRGMv2_3896_35 | HRGMv2_3896_35_6 | 14333 | 15574 | + | CotH |
| TC | HRGMv2_3896_35 | HRGMv2_3896_35_7 | 15694 | 17583 | + | 1.B.14.3.1 |
Gene ID: HRGMv2_3896_35_1
Type: CAZyme
Location: 943 - 3291 (+)
Type: CAZyme
Location: 943 - 3291 (+)
Gene ID: HRGMv2_3896_35_2
Type:
Location: 3385 - 5643 (+)
Type:
Location: 3385 - 5643 (+)
Gene ID: HRGMv2_3896_35_3
Type: peptidase
Location: 5705 - 7321 (+)
Type: peptidase
Location: 5705 - 7321 (+)
Gene ID: HRGMv2_3896_35_4
Type: CAZyme
Location: 7760 - 10069 (+)
Type: CAZyme
Location: 7760 - 10069 (+)
Gene ID: HRGMv2_3896_35_5
Type: CAZyme
Location: 10126 - 13629 (+)
Type: CAZyme
Location: 10126 - 13629 (+)
Gene ID: HRGMv2_3896_35_6
Type: pfam
Location: 14333 - 15574 (+)
Type: pfam
Location: 14333 - 15574 (+)
Gene ID: HRGMv2_3896_35_7
Type: TC
Location: 15694 - 17583 (+)
Type: TC
Location: 15694 - 17583 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.