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Cluster: HRGMv2_3896_CGC32

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3896_32 HRGMv2_3896_32_19 23481 24668 + 1.B.57.4.6
pfam HRGMv2_3896_32 HRGMv2_3896_32_20 24817 25296 + YgbB
CAZyme HRGMv2_3896_32 HRGMv2_3896_32_21 26200 27168 + CBM50
CAZyme HRGMv2_3896_32 HRGMv2_3896_32_22 27496 28272 - GT2
CAZyme HRGMv2_3896_32 HRGMv2_3896_32_23 28265 29542 - GT4
CAZyme HRGMv2_3896_32 HRGMv2_3896_32_24 29879 31894 - GH13_7
pfam HRGMv2_3896_32 HRGMv2_3896_32_25 32445 33821 - SusF_SusE | SusF_N
pfam HRGMv2_3896_32 HRGMv2_3896_32_26 33845 35023 - SusE | SusF_SusE
TC HRGMv2_3896_32 HRGMv2_3896_32_27 35093 36241 - 8.A.46.1.1
Gene ID: HRGMv2_3896_32_19
Type: TC
Location: 23481 - 24668 (+)
Gene ID: HRGMv2_3896_32_20
Type: pfam
Location: 24817 - 25296 (+)
Gene ID: HRGMv2_3896_32_21
Type: CAZyme
Location: 26200 - 27168 (+)
Gene ID: HRGMv2_3896_32_22
Type: CAZyme
Location: 27496 - 28272 (-)
Gene ID: HRGMv2_3896_32_23
Type: CAZyme
Location: 28265 - 29542 (-)
Gene ID: HRGMv2_3896_32_24
Type: CAZyme
Location: 29879 - 31894 (-)
Gene ID: HRGMv2_3896_32_25
Type: pfam
Location: 32445 - 33821 (-)
Gene ID: HRGMv2_3896_32_26
Type: pfam
Location: 33845 - 35023 (-)
Gene ID: HRGMv2_3896_32_27
Type: TC
Location: 35093 - 36241 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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