Cluster: HRGMv2_3896_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate: beta-mannan/xylan/beta-glucan
- Genome ID: HRGMv2_3896
- CGC Family ID: CGCFAM_00044
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3896_2 | HRGMv2_3896_2_92 | 128852 | 131968 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_3896_2 | HRGMv2_3896_2_93 | 132081 | 133679 | - | GH35 |
| CAZyme | HRGMv2_3896_2 | HRGMv2_3896_2_94 | 133694 | 135646 | - | GH67 |
| pfam | HRGMv2_3896_2 | HRGMv2_3896_2_95 | 136145 | 137335 | + | Lipase_GDSL | Lipase_GDSL_2 |
| TC | HRGMv2_3896_2 | HRGMv2_3896_2_96 | 137397 | 138809 | + | 2.A.2.3.2 |
| CAZyme | HRGMv2_3896_2 | HRGMv2_3896_2_97 | 138823 | 139941 | + | GH10 |
| CAZyme | HRGMv2_3896_2 | HRGMv2_3896_2_98 | 140031 | 140960 | + | GH43_1 |
Gene ID: HRGMv2_3896_2_92
Type: TC
Location: 128852 - 131968 (-)
Type: TC
Location: 128852 - 131968 (-)
Gene ID: HRGMv2_3896_2_93
Type: CAZyme
Location: 132081 - 133679 (-)
Type: CAZyme
Location: 132081 - 133679 (-)
Gene ID: HRGMv2_3896_2_94
Type: CAZyme
Location: 133694 - 135646 (-)
Type: CAZyme
Location: 133694 - 135646 (-)
Gene ID: HRGMv2_3896_2_95
Type: pfam
Location: 136145 - 137335 (+)
Type: pfam
Location: 136145 - 137335 (+)
Gene ID: HRGMv2_3896_2_96
Type: TC
Location: 137397 - 138809 (+)
Type: TC
Location: 137397 - 138809 (+)
Gene ID: HRGMv2_3896_2_97
Type: CAZyme
Location: 138823 - 139941 (+)
Type: CAZyme
Location: 138823 - 139941 (+)
Gene ID: HRGMv2_3896_2_98
Type: CAZyme
Location: 140031 - 140960 (+)
Type: CAZyme
Location: 140031 - 140960 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.