Cluster: HRGMv2_3896_CGC27
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: HRGMv2_3896
- CGC Family ID: CGCFAM_00001
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3896_25 | HRGMv2_3896_25_7 | 10600 | 12849 | - | GH3 |
| CAZyme | HRGMv2_3896_25 | HRGMv2_3896_25_8 | 13147 | 14667 | - | GH128 |
| CAZyme | HRGMv2_3896_25 | HRGMv2_3896_25_9 | 14664 | 17792 | - | GH16_3 |
| NULL(UNKNOWN) | HRGMv2_3896_25 | HRGMv2_3896_25_10 | 17818 | 18795 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_3896_25 | HRGMv2_3896_25_11 | 19079 | 19189 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3896_25 | HRGMv2_3896_25_12 | 19360 | 22590 | + | 1.B.14.6.1 |
| pfam | HRGMv2_3896_25 | HRGMv2_3896_25_13 | 22639 | 24159 | + | SusD_RagB | SusD-like_2 | SusD-like_3 |
| NULL(UNKNOWN) | HRGMv2_3896_25 | HRGMv2_3896_25_14 | 24187 | 25608 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3896_25 | HRGMv2_3896_25_15 | 25847 | 26962 | + | GH16_3 |
| CAZyme | HRGMv2_3896_25 | HRGMv2_3896_25_16 | 26966 | 28192 | + | GH5_46 |
Gene ID: HRGMv2_3896_25_7
Type: CAZyme
Location: 10600 - 12849 (-)
Type: CAZyme
Location: 10600 - 12849 (-)
Gene ID: HRGMv2_3896_25_8
Type: CAZyme
Location: 13147 - 14667 (-)
Type: CAZyme
Location: 13147 - 14667 (-)
Gene ID: HRGMv2_3896_25_9
Type: CAZyme
Location: 14664 - 17792 (-)
Type: CAZyme
Location: 14664 - 17792 (-)
Gene ID: HRGMv2_3896_25_10
Type:
Location: 17818 - 18795 (-)
Type:
Location: 17818 - 18795 (-)
Gene ID: HRGMv2_3896_25_11
Type:
Location: 19079 - 19189 (-)
Type:
Location: 19079 - 19189 (-)
Gene ID: HRGMv2_3896_25_12
Type: TC
Location: 19360 - 22590 (+)
Type: TC
Location: 19360 - 22590 (+)
Gene ID: HRGMv2_3896_25_13
Type: pfam
Location: 22639 - 24159 (+)
Type: pfam
Location: 22639 - 24159 (+)
Gene ID: HRGMv2_3896_25_14
Type:
Location: 24187 - 25608 (+)
Type:
Location: 24187 - 25608 (+)
Gene ID: HRGMv2_3896_25_15
Type: CAZyme
Location: 25847 - 26962 (+)
Type: CAZyme
Location: 25847 - 26962 (+)
Gene ID: HRGMv2_3896_25_16
Type: CAZyme
Location: 26966 - 28192 (+)
Type: CAZyme
Location: 26966 - 28192 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.