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Cluster: HRGMv2_3896_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3896_17 HRGMv2_3896_17_23 26630 28063 + 2.A.66.2.6
NULL(UNKNOWN) HRGMv2_3896_17 HRGMv2_3896_17_24 28066 29025 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3896_17 HRGMv2_3896_17_25 29183 30082 + Glycos_transf_2 | Glyco_tranf_2_3
CAZyme HRGMv2_3896_17 HRGMv2_3896_17_26 30353 32314 - GH51_2
CAZyme HRGMv2_3896_17 HRGMv2_3896_17_27 32427 35636 - GH2
CAZyme HRGMv2_3896_17 HRGMv2_3896_17_28 35656 36801 - GH105
CAZyme HRGMv2_3896_17 HRGMv2_3896_17_29 36833 38071 - GH154
NULL(UNKNOWN) HRGMv2_3896_17 HRGMv2_3896_17_30 38337 38549 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3896_17 HRGMv2_3896_17_31 38593 39015 - 9.B.124.1.3
Gene ID: HRGMv2_3896_17_23
Type: TC
Location: 26630 - 28063 (+)
Gene ID: HRGMv2_3896_17_24
Type:
Location: 28066 - 29025 (-)
Gene ID: HRGMv2_3896_17_25
Type: pfam
Location: 29183 - 30082 (+)
Gene ID: HRGMv2_3896_17_26
Type: CAZyme
Location: 30353 - 32314 (-)
Gene ID: HRGMv2_3896_17_27
Type: CAZyme
Location: 32427 - 35636 (-)
Gene ID: HRGMv2_3896_17_28
Type: CAZyme
Location: 35656 - 36801 (-)
Gene ID: HRGMv2_3896_17_29
Type: CAZyme
Location: 36833 - 38071 (-)
Gene ID: HRGMv2_3896_17_30
Type:
Location: 38337 - 38549 (-)
Gene ID: HRGMv2_3896_17_31
Type: TC
Location: 38593 - 39015 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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