Cluster: HRGMv2_3896_CGC12
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_3896
- CGC Family ID: CGCFAM_00862
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3896_9 | HRGMv2_3896_9_4 | 2652 | 4214 | + | 3.A.11.1.1 |
| CAZyme | HRGMv2_3896_9 | HRGMv2_3896_9_5 | 4390 | 7581 | - | CE8 |
| CAZyme | HRGMv2_3896_9 | HRGMv2_3896_9_6 | 7659 | 9998 | - | PL1_2 |
| NULL(UNKNOWN) | HRGMv2_3896_9 | HRGMv2_3896_9_7 | 10127 | 10765 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3896_9 | HRGMv2_3896_9_8 | 10943 | 11920 | - | CE8 |
| STP | HRGMv2_3896_9 | HRGMv2_3896_9_9 | 11967 | 14246 | - | HD |
| CAZyme | HRGMv2_3896_9 | HRGMv2_3896_9_10 | 14325 | 15734 | - | GH23 |
| pfam | HRGMv2_3896_9 | HRGMv2_3896_9_11 | 15819 | 16520 | - | DUF5683 |
| TF | HRGMv2_3896_9 | HRGMv2_3896_9_12 | 16563 | 17459 | - | HTH_3 |
| TC | HRGMv2_3896_9 | HRGMv2_3896_9_13 | 17490 | 18260 | - | 8.A.3.2.3 |
| pfam | HRGMv2_3896_9 | HRGMv2_3896_9_14 | 18423 | 19217 | + | SurE |
| CAZyme | HRGMv2_3896_9 | HRGMv2_3896_9_15 | 19257 | 20423 | + | GT19 |
| peptidase | HRGMv2_3896_9 | HRGMv2_3896_9_16 | 20643 | 21554 | - | S08.UNA |
| peptidase | HRGMv2_3896_9 | HRGMv2_3896_9_17 | 21577 | 23037 | - | S08.UPA |
| TC | HRGMv2_3896_9 | HRGMv2_3896_9_18 | 23164 | 24126 | - | 3.A.16.1.1 |
Gene ID: HRGMv2_3896_9_4
Type: TC
Location: 2652 - 4214 (+)
Type: TC
Location: 2652 - 4214 (+)
Gene ID: HRGMv2_3896_9_5
Type: CAZyme
Location: 4390 - 7581 (-)
Type: CAZyme
Location: 4390 - 7581 (-)
Gene ID: HRGMv2_3896_9_6
Type: CAZyme
Location: 7659 - 9998 (-)
Type: CAZyme
Location: 7659 - 9998 (-)
Gene ID: HRGMv2_3896_9_7
Type:
Location: 10127 - 10765 (-)
Type:
Location: 10127 - 10765 (-)
Gene ID: HRGMv2_3896_9_8
Type: CAZyme
Location: 10943 - 11920 (-)
Type: CAZyme
Location: 10943 - 11920 (-)
Gene ID: HRGMv2_3896_9_9
Type: STP
Location: 11967 - 14246 (-)
Type: STP
Location: 11967 - 14246 (-)
Gene ID: HRGMv2_3896_9_10
Type: CAZyme
Location: 14325 - 15734 (-)
Type: CAZyme
Location: 14325 - 15734 (-)
Gene ID: HRGMv2_3896_9_11
Type: pfam
Location: 15819 - 16520 (-)
Type: pfam
Location: 15819 - 16520 (-)
Gene ID: HRGMv2_3896_9_12
Type: TF
Location: 16563 - 17459 (-)
Type: TF
Location: 16563 - 17459 (-)
Gene ID: HRGMv2_3896_9_13
Type: TC
Location: 17490 - 18260 (-)
Type: TC
Location: 17490 - 18260 (-)
Gene ID: HRGMv2_3896_9_14
Type: pfam
Location: 18423 - 19217 (+)
Type: pfam
Location: 18423 - 19217 (+)
Gene ID: HRGMv2_3896_9_15
Type: CAZyme
Location: 19257 - 20423 (+)
Type: CAZyme
Location: 19257 - 20423 (+)
Gene ID: HRGMv2_3896_9_16
Type: peptidase
Location: 20643 - 21554 (-)
Type: peptidase
Location: 20643 - 21554 (-)
Gene ID: HRGMv2_3896_9_17
Type: peptidase
Location: 21577 - 23037 (-)
Type: peptidase
Location: 21577 - 23037 (-)
Gene ID: HRGMv2_3896_9_18
Type: TC
Location: 23164 - 24126 (-)
Type: TC
Location: 23164 - 24126 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.