Cluster: HRGMv2_3896_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: HRGMv2_3896
- CGC Family ID: CGCFAM_00001
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3896_7 | HRGMv2_3896_7_33 | 39503 | 42637 | + | 1.B.14.6.1 |
| TC | HRGMv2_3896_7 | HRGMv2_3896_7_34 | 42655 | 44532 | + | 8.A.46.1.6 |
| peptidase | HRGMv2_3896_7 | HRGMv2_3896_7_35 | 44666 | 46930 | - | M06.UPW |
| CAZyme | HRGMv2_3896_7 | HRGMv2_3896_7_36 | 47332 | 50199 | - | GH2 |
| pfam | HRGMv2_3896_7 | HRGMv2_3896_7_37 | 50772 | 52403 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3896_7 | HRGMv2_3896_7_38 | 52432 | 55671 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_3896_7_33
Type: TC
Location: 39503 - 42637 (+)
Type: TC
Location: 39503 - 42637 (+)
Gene ID: HRGMv2_3896_7_34
Type: TC
Location: 42655 - 44532 (+)
Type: TC
Location: 42655 - 44532 (+)
Gene ID: HRGMv2_3896_7_35
Type: peptidase
Location: 44666 - 46930 (-)
Type: peptidase
Location: 44666 - 46930 (-)
Gene ID: HRGMv2_3896_7_36
Type: CAZyme
Location: 47332 - 50199 (-)
Type: CAZyme
Location: 47332 - 50199 (-)
Gene ID: HRGMv2_3896_7_37
Type: pfam
Location: 50772 - 52403 (-)
Type: pfam
Location: 50772 - 52403 (-)
Gene ID: HRGMv2_3896_7_38
Type: TC
Location: 52432 - 55671 (-)
Type: TC
Location: 52432 - 55671 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.