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Cluster: HRGMv2_3894_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3894_3 HRGMv2_3894_3_18 19217 21226 + 3.A.16.1.1
pfam HRGMv2_3894_3 HRGMv2_3894_3_19 21260 22099 + CTP_transf_1
CAZyme HRGMv2_3894_3 HRGMv2_3894_3_20 22203 23339 - GT19
pfam HRGMv2_3894_3 HRGMv2_3894_3_21 23336 24106 - SurE
TC HRGMv2_3894_3 HRGMv2_3894_3_22 24370 25137 + 8.A.3.2.3
pfam HRGMv2_3894_3 HRGMv2_3894_3_23 25143 26045 + ParBc | HTH_ParB | ParB_dimer
pfam HRGMv2_3894_3 HRGMv2_3894_3_24 26082 26852 + DUF5683
CAZyme HRGMv2_3894_3 HRGMv2_3894_3_25 26856 28121 + GH23
STP HRGMv2_3894_3 HRGMv2_3894_3_26 28260 30542 + HD
TF HRGMv2_3894_3 HRGMv2_3894_3_27 30597 30944 - MerR
TC HRGMv2_3894_3 HRGMv2_3894_3_28 30957 31925 - 1.A.34.1.3
Gene ID: HRGMv2_3894_3_18
Type: TC
Location: 19217 - 21226 (+)
Gene ID: HRGMv2_3894_3_19
Type: pfam
Location: 21260 - 22099 (+)
Gene ID: HRGMv2_3894_3_20
Type: CAZyme
Location: 22203 - 23339 (-)
Gene ID: HRGMv2_3894_3_21
Type: pfam
Location: 23336 - 24106 (-)
Gene ID: HRGMv2_3894_3_22
Type: TC
Location: 24370 - 25137 (+)
Gene ID: HRGMv2_3894_3_23
Type: pfam
Location: 25143 - 26045 (+)
Gene ID: HRGMv2_3894_3_24
Type: pfam
Location: 26082 - 26852 (+)
Gene ID: HRGMv2_3894_3_25
Type: CAZyme
Location: 26856 - 28121 (+)
Gene ID: HRGMv2_3894_3_26
Type: STP
Location: 28260 - 30542 (+)
Gene ID: HRGMv2_3894_3_27
Type: TF
Location: 30597 - 30944 (-)
Gene ID: HRGMv2_3894_3_28
Type: TC
Location: 30957 - 31925 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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