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Cluster: HRGMv2_3894_CGC43

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3894_29 HRGMv2_3894_29_2 705 2684 - GT51
NULL(UNKNOWN) HRGMv2_3894_29 HRGMv2_3894_29_3 2752 3690 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3894_29 HRGMv2_3894_29_4 3816 4661 - S1_2 | CvfB_WH
TC HRGMv2_3894_29 HRGMv2_3894_29_5 4746 5411 - 3.A.1.125.1
TC HRGMv2_3894_29 HRGMv2_3894_29_6 5416 6138 - 3.A.16.1.3
TC HRGMv2_3894_29 HRGMv2_3894_29_7 6135 8279 - 2.A.37.2.5
pfam HRGMv2_3894_29 HRGMv2_3894_29_8 8500 9510 + Semialdhyde_dh | Semialdhyde_dhC
TC HRGMv2_3894_29 HRGMv2_3894_29_9 9603 10703 - 3.A.1.132.3
Gene ID: HRGMv2_3894_29_2
Type: CAZyme
Location: 705 - 2684 (-)
Gene ID: HRGMv2_3894_29_3
Type:
Location: 2752 - 3690 (-)
Gene ID: HRGMv2_3894_29_4
Type: pfam
Location: 3816 - 4661 (-)
Gene ID: HRGMv2_3894_29_5
Type: TC
Location: 4746 - 5411 (-)
Gene ID: HRGMv2_3894_29_6
Type: TC
Location: 5416 - 6138 (-)
Gene ID: HRGMv2_3894_29_7
Type: TC
Location: 6135 - 8279 (-)
Gene ID: HRGMv2_3894_29_8
Type: pfam
Location: 8500 - 9510 (+)
Gene ID: HRGMv2_3894_29_9
Type: TC
Location: 9603 - 10703 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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