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Cluster: HRGMv2_3894_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3894_6 HRGMv2_3894_6_2 747 2960 + GH10
CAZyme HRGMv2_3894_6 HRGMv2_3894_6_3 2981 4615 + GH30_8
CAZyme HRGMv2_3894_6 HRGMv2_3894_6_4 4655 7048 + GH146
CAZyme HRGMv2_3894_6 HRGMv2_3894_6_5 7300 8175 - CE1
CAZyme HRGMv2_3894_6 HRGMv2_3894_6_6 8205 9344 - CE1
CAZyme HRGMv2_3894_6 HRGMv2_3894_6_7 9400 10800 - CBM6 | GH43_29
TC HRGMv2_3894_6 HRGMv2_3894_6_8 11252 12745 + 2.A.2.3.4
CAZyme HRGMv2_3894_6 HRGMv2_3894_6_9 12767 13903 + GH10
CAZyme HRGMv2_3894_6 HRGMv2_3894_6_10 13937 14911 + GH43_1
CAZyme HRGMv2_3894_6 HRGMv2_3894_6_11 14905 16914 + GH67
TF HRGMv2_3894_6 HRGMv2_3894_6_12 17028 21152 - HTH_AraC
CAZyme HRGMv2_3894_6 HRGMv2_3894_6_13 21231 23831 - GH3
pfam HRGMv2_3894_6 HRGMv2_3894_6_14 23873 26644 - UvrA_DNA-bind | UvrA_inter
pfam HRGMv2_3894_6 HRGMv2_3894_6_15 26786 28285 + GHL10
CAZyme HRGMv2_3894_6 HRGMv2_3894_6_16 28629 31973 + GH142 | GH143
CAZyme HRGMv2_3894_6 HRGMv2_3894_6_17 32027 33469 + GH140
CAZyme HRGMv2_3894_6 HRGMv2_3894_6_18 33469 37305 + CBM67 | GH33 | GH78
CAZyme HRGMv2_3894_6 HRGMv2_3894_6_19 37362 39536 + GH78
CAZyme HRGMv2_3894_6 HRGMv2_3894_6_20 39620 41542 - GH63
CAZyme HRGMv2_3894_6 HRGMv2_3894_6_21 41555 44722 - GH2
TC HRGMv2_3894_6 HRGMv2_3894_6_22 44736 45338 - 2.A.124.1.2
TC HRGMv2_3894_6 HRGMv2_3894_6_23 45335 45613 - 2.A.124.1.2
pfam HRGMv2_3894_6 HRGMv2_3894_6_24 45638 47131 - SusD_RagB | SusD-like_3
TC HRGMv2_3894_6 HRGMv2_3894_6_25 47157 50264 - 1.B.14.6.1
Gene ID: HRGMv2_3894_6_2
Type: CAZyme
Location: 747 - 2960 (+)
Gene ID: HRGMv2_3894_6_3
Type: CAZyme
Location: 2981 - 4615 (+)
Gene ID: HRGMv2_3894_6_4
Type: CAZyme
Location: 4655 - 7048 (+)
Gene ID: HRGMv2_3894_6_5
Type: CAZyme
Location: 7300 - 8175 (-)
Gene ID: HRGMv2_3894_6_6
Type: CAZyme
Location: 8205 - 9344 (-)
Gene ID: HRGMv2_3894_6_7
Type: CAZyme
Location: 9400 - 10800 (-)
Gene ID: HRGMv2_3894_6_8
Type: TC
Location: 11252 - 12745 (+)
Gene ID: HRGMv2_3894_6_9
Type: CAZyme
Location: 12767 - 13903 (+)
Gene ID: HRGMv2_3894_6_10
Type: CAZyme
Location: 13937 - 14911 (+)
Gene ID: HRGMv2_3894_6_11
Type: CAZyme
Location: 14905 - 16914 (+)
Gene ID: HRGMv2_3894_6_12
Type: TF
Location: 17028 - 21152 (-)
Gene ID: HRGMv2_3894_6_13
Type: CAZyme
Location: 21231 - 23831 (-)
Gene ID: HRGMv2_3894_6_14
Type: pfam
Location: 23873 - 26644 (-)
Gene ID: HRGMv2_3894_6_15
Type: pfam
Location: 26786 - 28285 (+)
Gene ID: HRGMv2_3894_6_16
Type: CAZyme
Location: 28629 - 31973 (+)
Gene ID: HRGMv2_3894_6_17
Type: CAZyme
Location: 32027 - 33469 (+)
Gene ID: HRGMv2_3894_6_18
Type: CAZyme
Location: 33469 - 37305 (+)
Gene ID: HRGMv2_3894_6_19
Type: CAZyme
Location: 37362 - 39536 (+)
Gene ID: HRGMv2_3894_6_20
Type: CAZyme
Location: 39620 - 41542 (-)
Gene ID: HRGMv2_3894_6_21
Type: CAZyme
Location: 41555 - 44722 (-)
Gene ID: HRGMv2_3894_6_22
Type: TC
Location: 44736 - 45338 (-)
Gene ID: HRGMv2_3894_6_23
Type: TC
Location: 45335 - 45613 (-)
Gene ID: HRGMv2_3894_6_24
Type: pfam
Location: 45638 - 47131 (-)
Gene ID: HRGMv2_3894_6_25
Type: TC
Location: 47157 - 50264 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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