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Cluster: HRGMv2_3883_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3883_12 HRGMv2_3883_12_8 7173 11453 + GT3 | GT35
pfam HRGMv2_3883_12 HRGMv2_3883_12_9 11519 12409 - Exo_endo_phos | Exo_endo_phos_3
pfam HRGMv2_3883_12 HRGMv2_3883_12_10 12642 13082 - Thioredoxin | Thioredox_DsbH | Thioredoxin_2 | Thioredoxin_7
TC HRGMv2_3883_12 HRGMv2_3883_12_11 13152 14852 - 2.A.49.5.4
NULL(UNKNOWN) HRGMv2_3883_12 HRGMv2_3883_12_12 15973 16683 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3883_12 HRGMv2_3883_12_13 17036 17548 + Flavin_Reduct
TC HRGMv2_3883_12 HRGMv2_3883_12_14 17632 18198 - 9.B.171.1.4
pfam HRGMv2_3883_12 HRGMv2_3883_12_15 18279 20933 + Poly_export | SLBB | SLBB | SLBB | SLBB_2 | SLBB_2
CAZyme HRGMv2_3883_12 HRGMv2_3883_12_16 20955 22235 + GT30
Gene ID: HRGMv2_3883_12_8
Type: CAZyme
Location: 7173 - 11453 (+)
Gene ID: HRGMv2_3883_12_9
Type: pfam
Location: 11519 - 12409 (-)
Gene ID: HRGMv2_3883_12_10
Type: pfam
Location: 12642 - 13082 (-)
Gene ID: HRGMv2_3883_12_11
Type: TC
Location: 13152 - 14852 (-)
Gene ID: HRGMv2_3883_12_12
Type:
Location: 15973 - 16683 (-)
Gene ID: HRGMv2_3883_12_13
Type: pfam
Location: 17036 - 17548 (+)
Gene ID: HRGMv2_3883_12_14
Type: TC
Location: 17632 - 18198 (-)
Gene ID: HRGMv2_3883_12_15
Type: pfam
Location: 18279 - 20933 (+)
Gene ID: HRGMv2_3883_12_16
Type: CAZyme
Location: 20955 - 22235 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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