Cluster: HRGMv2_3883_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3883
- CGC Family ID: CGCFAM_10495
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3883_67 | HRGMv2_3883_67_3 | 1814 | 2557 | + | 3.A.1.122.2 |
| TC | HRGMv2_3883_67 | HRGMv2_3883_67_4 | 2571 | 3791 | + | 3.A.1.122.2 |
| peptidase | HRGMv2_3883_67 | HRGMv2_3883_67_5 | 3981 | 4808 | - | M48.UPC |
| pfam | HRGMv2_3883_67 | HRGMv2_3883_67_6 | 4932 | 7274 | - | FtsX | FtsX | MacB_PCD |
| CAZyme | HRGMv2_3883_67 | HRGMv2_3883_67_7 | 7516 | 9648 | + | GH141 |
Gene ID: HRGMv2_3883_67_3
Type: TC
Location: 1814 - 2557 (+)
Type: TC
Location: 1814 - 2557 (+)
Gene ID: HRGMv2_3883_67_4
Type: TC
Location: 2571 - 3791 (+)
Type: TC
Location: 2571 - 3791 (+)
Gene ID: HRGMv2_3883_67_5
Type: peptidase
Location: 3981 - 4808 (-)
Type: peptidase
Location: 3981 - 4808 (-)
Gene ID: HRGMv2_3883_67_6
Type: pfam
Location: 4932 - 7274 (-)
Type: pfam
Location: 4932 - 7274 (-)
Gene ID: HRGMv2_3883_67_7
Type: CAZyme
Location: 7516 - 9648 (+)
Type: CAZyme
Location: 7516 - 9648 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Rikenella
Species
Rikenella faecigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.