Cluster: HRGMv2_3883_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3883
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3883_45 | HRGMv2_3883_45_5 | 6006 | 6641 | - | 9.B.31.1.2 |
| TC | HRGMv2_3883_45 | HRGMv2_3883_45_6 | 6807 | 8078 | + | 3.A.1.122.2 |
| CAZyme | HRGMv2_3883_45 | HRGMv2_3883_45_7 | 8127 | 10325 | + | GH92 |
| CAZyme | HRGMv2_3883_45 | HRGMv2_3883_45_8 | 10412 | 12697 | - | GH92 |
| TC | HRGMv2_3883_45 | HRGMv2_3883_45_9 | 12744 | 13400 | - | 3.A.1.125.1 |
| TC | HRGMv2_3883_45 | HRGMv2_3883_45_10 | 13514 | 16492 | - | 2.A.6.4.3 |
Gene ID: HRGMv2_3883_45_5
Type: TC
Location: 6006 - 6641 (-)
Type: TC
Location: 6006 - 6641 (-)
Gene ID: HRGMv2_3883_45_6
Type: TC
Location: 6807 - 8078 (+)
Type: TC
Location: 6807 - 8078 (+)
Gene ID: HRGMv2_3883_45_7
Type: CAZyme
Location: 8127 - 10325 (+)
Type: CAZyme
Location: 8127 - 10325 (+)
Gene ID: HRGMv2_3883_45_8
Type: CAZyme
Location: 10412 - 12697 (-)
Type: CAZyme
Location: 10412 - 12697 (-)
Gene ID: HRGMv2_3883_45_9
Type: TC
Location: 12744 - 13400 (-)
Type: TC
Location: 12744 - 13400 (-)
Gene ID: HRGMv2_3883_45_10
Type: TC
Location: 13514 - 16492 (-)
Type: TC
Location: 13514 - 16492 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Rikenella
Species
Rikenella faecigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.