Cluster: HRGMv2_3882_CGC24
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3882
- CGC Family ID: CGCFAM_03696
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3882_68 | HRGMv2_3882_68_3 | 1128 | 2792 | + | 2.A.81.1.2 |
| STP | HRGMv2_3882_68 | HRGMv2_3882_68_4 | 3134 | 4321 | + | Aminotran_1_2 |
| TC | HRGMv2_3882_68 | HRGMv2_3882_68_5 | 4520 | 4960 | - | 3.D.1.8.1 |
| pfam | HRGMv2_3882_68 | HRGMv2_3882_68_6 | 4978 | 6150 | - | ATP-grasp | CPSase_L_D2 | Dala_Dala_lig_C | PurT_C | RS_preATP-grasp-like |
| CAZyme | HRGMv2_3882_68 | HRGMv2_3882_68_7 | 6265 | 8466 | + | GH163 |
| TC | HRGMv2_3882_68 | HRGMv2_3882_68_8 | 9146 | 9886 | + | 3.A.1.140.1 |
Gene ID: HRGMv2_3882_68_3
Type: TC
Location: 1128 - 2792 (+)
Type: TC
Location: 1128 - 2792 (+)
Gene ID: HRGMv2_3882_68_4
Type: STP
Location: 3134 - 4321 (+)
Type: STP
Location: 3134 - 4321 (+)
Gene ID: HRGMv2_3882_68_5
Type: TC
Location: 4520 - 4960 (-)
Type: TC
Location: 4520 - 4960 (-)
Gene ID: HRGMv2_3882_68_6
Type: pfam
Location: 4978 - 6150 (-)
Type: pfam
Location: 4978 - 6150 (-)
Gene ID: HRGMv2_3882_68_7
Type: CAZyme
Location: 6265 - 8466 (+)
Type: CAZyme
Location: 6265 - 8466 (+)
Gene ID: HRGMv2_3882_68_8
Type: TC
Location: 9146 - 9886 (+)
Type: TC
Location: 9146 - 9886 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes faecavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3882_68_7 | vegan > omnivore | 1.63389 | 0.00842 |
| HRGMv2_3882_68_7 | vegetarian > omnivore | 1.04826 | 0.04182 |