Cluster: HRGMv2_3882_CGC22
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3882
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3882_56 | HRGMv2_3882_56_3 | 846 | 1520 | - | 1.A.30.2.9 |
| pfam | HRGMv2_3882_56 | HRGMv2_3882_56_4 | 1672 | 6234 | - | TamB |
| pfam | HRGMv2_3882_56 | HRGMv2_3882_56_5 | 6324 | 7346 | + | TsaD |
| TC | HRGMv2_3882_56 | HRGMv2_3882_56_6 | 7485 | 8816 | + | 2.A.1.7.9 |
| TC | HRGMv2_3882_56 | HRGMv2_3882_56_7 | 8925 | 10421 | - | 2.A.36.6.5 |
| NULL(UNKNOWN) | HRGMv2_3882_56 | HRGMv2_3882_56_8 | 10518 | 11318 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3882_56 | HRGMv2_3882_56_9 | 11403 | 12797 | + | CE11 |
Gene ID: HRGMv2_3882_56_3
Type: TC
Location: 846 - 1520 (-)
Type: TC
Location: 846 - 1520 (-)
Gene ID: HRGMv2_3882_56_4
Type: pfam
Location: 1672 - 6234 (-)
Type: pfam
Location: 1672 - 6234 (-)
Gene ID: HRGMv2_3882_56_5
Type: pfam
Location: 6324 - 7346 (+)
Type: pfam
Location: 6324 - 7346 (+)
Gene ID: HRGMv2_3882_56_6
Type: TC
Location: 7485 - 8816 (+)
Type: TC
Location: 7485 - 8816 (+)
Gene ID: HRGMv2_3882_56_7
Type: TC
Location: 8925 - 10421 (-)
Type: TC
Location: 8925 - 10421 (-)
Gene ID: HRGMv2_3882_56_8
Type:
Location: 10518 - 11318 (-)
Type:
Location: 10518 - 11318 (-)
Gene ID: HRGMv2_3882_56_9
Type: CAZyme
Location: 11403 - 12797 (+)
Type: CAZyme
Location: 11403 - 12797 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes faecavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.