Cluster: HRGMv2_3882_CGC17
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: HRGMv2_3882
- CGC Family ID: CGCFAM_00111
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3882_34 | HRGMv2_3882_34_11 | 12990 | 16394 | - | 1.B.14.6.1 |
| STP | HRGMv2_3882_34 | HRGMv2_3882_34_12 | 16471 | 17463 | - | FecR |
| TF | HRGMv2_3882_34 | HRGMv2_3882_34_13 | 17620 | 18180 | - | GerE |
| CAZyme | HRGMv2_3882_34 | HRGMv2_3882_34_14 | 18396 | 19226 | + | GT4 |
Gene ID: HRGMv2_3882_34_11
Type: TC
Location: 12990 - 16394 (-)
Type: TC
Location: 12990 - 16394 (-)
Gene ID: HRGMv2_3882_34_12
Type: STP
Location: 16471 - 17463 (-)
Type: STP
Location: 16471 - 17463 (-)
Gene ID: HRGMv2_3882_34_13
Type: TF
Location: 17620 - 18180 (-)
Type: TF
Location: 17620 - 18180 (-)
Gene ID: HRGMv2_3882_34_14
Type: CAZyme
Location: 18396 - 19226 (+)
Type: CAZyme
Location: 18396 - 19226 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes faecavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.