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Cluster: HRGMv2_3882_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3882_1 HRGMv2_3882_1_24 33498 33875 - 1.A.43.1.13
CAZyme HRGMv2_3882_1 HRGMv2_3882_1_25 34007 37843 - GH31_18
CAZyme HRGMv2_3882_1 HRGMv2_3882_1_26 37885 41925 - CBM32 | GH2
STP HRGMv2_3882_1 HRGMv2_3882_1_27 42114 42989 - PfkB
CAZyme HRGMv2_3882_1 HRGMv2_3882_1_28 43098 44942 - GH32
TC HRGMv2_3882_1 HRGMv2_3882_1_29 45031 47496 - 3.A.3.5.19
TF HRGMv2_3882_1 HRGMv2_3882_1_30 47627 48223 - HTH_AraC
pfam HRGMv2_3882_1 HRGMv2_3882_1_31 48238 49770 - Acetyltransf_1 | CN_hydrolase
TC HRGMv2_3882_1 HRGMv2_3882_1_32 49993 52665 + 1.B.14.12.3
Gene ID: HRGMv2_3882_1_24
Type: TC
Location: 33498 - 33875 (-)
Gene ID: HRGMv2_3882_1_25
Type: CAZyme
Location: 34007 - 37843 (-)
Gene ID: HRGMv2_3882_1_26
Type: CAZyme
Location: 37885 - 41925 (-)
Gene ID: HRGMv2_3882_1_27
Type: STP
Location: 42114 - 42989 (-)
Gene ID: HRGMv2_3882_1_28
Type: CAZyme
Location: 43098 - 44942 (-)
Gene ID: HRGMv2_3882_1_29
Type: TC
Location: 45031 - 47496 (-)
Gene ID: HRGMv2_3882_1_30
Type: TF
Location: 47627 - 48223 (-)
Gene ID: HRGMv2_3882_1_31
Type: pfam
Location: 48238 - 49770 (-)
Gene ID: HRGMv2_3882_1_32
Type: TC
Location: 49993 - 52665 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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