Cluster: HRGMv2_3879_CGC29
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3879
- CGC Family ID: CGCFAM_07216
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3879_26 | HRGMv2_3879_26_16 | 10030 | 10371 | + | 3.A.7.19.1 |
| NULL(UNKNOWN) | HRGMv2_3879_26 | HRGMv2_3879_26_17 | 10368 | 10466 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3879_26 | HRGMv2_3879_26_18 | 10571 | 13654 | + | GH2 |
| TF | HRGMv2_3879_26 | HRGMv2_3879_26_19 | 13739 | 14206 | - | MarR |
| STP | HRGMv2_3879_26 | HRGMv2_3879_26_20 | 14388 | 15680 | + | Aminotran_1_2 |
| CAZyme | HRGMv2_3879_26 | HRGMv2_3879_26_21 | 15791 | 17695 | - | GH43_4 |
| NULL(UNKNOWN) | HRGMv2_3879_26 | HRGMv2_3879_26_22 | 17787 | 18266 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3879_26 | HRGMv2_3879_26_23 | 18346 | 20133 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3879_26 | HRGMv2_3879_26_24 | 20155 | 23361 | - | 1.B.14.6.1 |
| pfam | HRGMv2_3879_26 | HRGMv2_3879_26_25 | 23408 | 25198 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3879_26 | HRGMv2_3879_26_26 | 25198 | 28353 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_3879_26_16
Type: TC
Location: 10030 - 10371 (+)
Type: TC
Location: 10030 - 10371 (+)
Gene ID: HRGMv2_3879_26_17
Type:
Location: 10368 - 10466 (+)
Type:
Location: 10368 - 10466 (+)
Gene ID: HRGMv2_3879_26_18
Type: CAZyme
Location: 10571 - 13654 (+)
Type: CAZyme
Location: 10571 - 13654 (+)
Gene ID: HRGMv2_3879_26_19
Type: TF
Location: 13739 - 14206 (-)
Type: TF
Location: 13739 - 14206 (-)
Gene ID: HRGMv2_3879_26_20
Type: STP
Location: 14388 - 15680 (+)
Type: STP
Location: 14388 - 15680 (+)
Gene ID: HRGMv2_3879_26_21
Type: CAZyme
Location: 15791 - 17695 (-)
Type: CAZyme
Location: 15791 - 17695 (-)
Gene ID: HRGMv2_3879_26_22
Type:
Location: 17787 - 18266 (-)
Type:
Location: 17787 - 18266 (-)
Gene ID: HRGMv2_3879_26_23
Type: pfam
Location: 18346 - 20133 (-)
Type: pfam
Location: 18346 - 20133 (-)
Gene ID: HRGMv2_3879_26_24
Type: TC
Location: 20155 - 23361 (-)
Type: TC
Location: 20155 - 23361 (-)
Gene ID: HRGMv2_3879_26_25
Type: pfam
Location: 23408 - 25198 (-)
Type: pfam
Location: 23408 - 25198 (-)
Gene ID: HRGMv2_3879_26_26
Type: TC
Location: 25198 - 28353 (-)
Type: TC
Location: 25198 - 28353 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Muribaculum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.