Cluster: HRGMv2_3878_CGC32
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3878
- CGC Family ID: CGCFAM_04214
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3878_26 | HRGMv2_3878_26_17 | 19382 | 20545 | - | 2.A.1.7.17 |
| CAZyme | HRGMv2_3878_26 | HRGMv2_3878_26_18 | 20650 | 22845 | - | GH36 |
| CAZyme | HRGMv2_3878_26 | HRGMv2_3878_26_19 | 22865 | 24751 | - | GH32 |
| NULL(UNKNOWN) | HRGMv2_3878_26 | HRGMv2_3878_26_20 | 24989 | 27337 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3878_26 | HRGMv2_3878_26_21 | 27589 | 29460 | - | GH29 |
| TF | HRGMv2_3878_26 | HRGMv2_3878_26_22 | 29607 | 30329 | - | LytTR |
| pfam | HRGMv2_3878_26 | HRGMv2_3878_26_23 | 30326 | 31336 | - | His_kinase |
| TC | HRGMv2_3878_26 | HRGMv2_3878_26_24 | 31567 | 32682 | + | 8.A.1.6.3 |
| TC | HRGMv2_3878_26 | HRGMv2_3878_26_25 | 32692 | 35838 | + | 2.A.6.2.22 |
| TC | HRGMv2_3878_26 | HRGMv2_3878_26_26 | 35840 | 37219 | + | 2.A.6.2.23 |
| NULL(UNKNOWN) | HRGMv2_3878_26 | HRGMv2_3878_26_27 | 37337 | 38821 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3878_26 | HRGMv2_3878_26_28 | 38946 | 39980 | - | 8.A.1.1.1 |
Gene ID: HRGMv2_3878_26_17
Type: TC
Location: 19382 - 20545 (-)
Type: TC
Location: 19382 - 20545 (-)
Gene ID: HRGMv2_3878_26_18
Type: CAZyme
Location: 20650 - 22845 (-)
Type: CAZyme
Location: 20650 - 22845 (-)
Gene ID: HRGMv2_3878_26_19
Type: CAZyme
Location: 22865 - 24751 (-)
Type: CAZyme
Location: 22865 - 24751 (-)
Gene ID: HRGMv2_3878_26_20
Type:
Location: 24989 - 27337 (-)
Type:
Location: 24989 - 27337 (-)
Gene ID: HRGMv2_3878_26_21
Type: CAZyme
Location: 27589 - 29460 (-)
Type: CAZyme
Location: 27589 - 29460 (-)
Gene ID: HRGMv2_3878_26_22
Type: TF
Location: 29607 - 30329 (-)
Type: TF
Location: 29607 - 30329 (-)
Gene ID: HRGMv2_3878_26_23
Type: pfam
Location: 30326 - 31336 (-)
Type: pfam
Location: 30326 - 31336 (-)
Gene ID: HRGMv2_3878_26_24
Type: TC
Location: 31567 - 32682 (+)
Type: TC
Location: 31567 - 32682 (+)
Gene ID: HRGMv2_3878_26_25
Type: TC
Location: 32692 - 35838 (+)
Type: TC
Location: 32692 - 35838 (+)
Gene ID: HRGMv2_3878_26_26
Type: TC
Location: 35840 - 37219 (+)
Type: TC
Location: 35840 - 37219 (+)
Gene ID: HRGMv2_3878_26_27
Type:
Location: 37337 - 38821 (-)
Type:
Location: 37337 - 38821 (-)
Gene ID: HRGMv2_3878_26_28
Type: TC
Location: 38946 - 39980 (-)
Type: TC
Location: 38946 - 39980 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Barnesiellaceae
Genus
Barnesiella
Species
Barnesiella merdipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.