Cluster: HRGMv2_3878_CGC28
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 9
- Substrate:
- Genome ID: HRGMv2_3878
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3878_21 | HRGMv2_3878_21_30 | 32925 | 34082 | - | GT4 |
| CAZyme | HRGMv2_3878_21 | HRGMv2_3878_21_31 | 34088 | 35185 | - | GT4 |
| pfam | HRGMv2_3878_21 | HRGMv2_3878_21_32 | 35178 | 36185 | - | Glyco_trans_1_4 |
| pfam | HRGMv2_3878_21 | HRGMv2_3878_21_33 | 36190 | 37470 | - | Wzy_C |
| CAZyme | HRGMv2_3878_21 | HRGMv2_3878_21_34 | 37473 | 38600 | - | GT4 |
| CAZyme | HRGMv2_3878_21 | HRGMv2_3878_21_35 | 38597 | 39841 | - | GT4 |
| CAZyme | HRGMv2_3878_21 | HRGMv2_3878_21_36 | 40039 | 40974 | - | GT27 |
| pfam | HRGMv2_3878_21 | HRGMv2_3878_21_37 | 40977 | 42125 | - | Epimerase_2 |
| CAZyme | HRGMv2_3878_21 | HRGMv2_3878_21_38 | 42156 | 43304 | - | GT4 |
| CAZyme | HRGMv2_3878_21 | HRGMv2_3878_21_39 | 43345 | 44103 | - | GT32 |
| CAZyme | HRGMv2_3878_21 | HRGMv2_3878_21_40 | 44792 | 45616 | - | GT32 |
| CAZyme | HRGMv2_3878_21 | HRGMv2_3878_21_41 | 45958 | 46689 | - | GT32 |
| NULL(UNKNOWN) | HRGMv2_3878_21 | HRGMv2_3878_21_42 | 46694 | 48226 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3878_21 | HRGMv2_3878_21_43 | 48273 | 50708 | - | 8.A.3.3.2 |
| pfam | HRGMv2_3878_21 | HRGMv2_3878_21_44 | 50720 | 51490 | - | Poly_export | SLBB | SLBB_2 |
| TC | HRGMv2_3878_21 | HRGMv2_3878_21_45 | 51546 | 52667 | - | 9.B.146.1.4 |
Gene ID: HRGMv2_3878_21_30
Type: CAZyme
Location: 32925 - 34082 (-)
Type: CAZyme
Location: 32925 - 34082 (-)
Gene ID: HRGMv2_3878_21_31
Type: CAZyme
Location: 34088 - 35185 (-)
Type: CAZyme
Location: 34088 - 35185 (-)
Gene ID: HRGMv2_3878_21_32
Type: pfam
Location: 35178 - 36185 (-)
Type: pfam
Location: 35178 - 36185 (-)
Gene ID: HRGMv2_3878_21_33
Type: pfam
Location: 36190 - 37470 (-)
Type: pfam
Location: 36190 - 37470 (-)
Gene ID: HRGMv2_3878_21_34
Type: CAZyme
Location: 37473 - 38600 (-)
Type: CAZyme
Location: 37473 - 38600 (-)
Gene ID: HRGMv2_3878_21_35
Type: CAZyme
Location: 38597 - 39841 (-)
Type: CAZyme
Location: 38597 - 39841 (-)
Gene ID: HRGMv2_3878_21_36
Type: CAZyme
Location: 40039 - 40974 (-)
Type: CAZyme
Location: 40039 - 40974 (-)
Gene ID: HRGMv2_3878_21_37
Type: pfam
Location: 40977 - 42125 (-)
Type: pfam
Location: 40977 - 42125 (-)
Gene ID: HRGMv2_3878_21_38
Type: CAZyme
Location: 42156 - 43304 (-)
Type: CAZyme
Location: 42156 - 43304 (-)
Gene ID: HRGMv2_3878_21_39
Type: CAZyme
Location: 43345 - 44103 (-)
Type: CAZyme
Location: 43345 - 44103 (-)
Gene ID: HRGMv2_3878_21_40
Type: CAZyme
Location: 44792 - 45616 (-)
Type: CAZyme
Location: 44792 - 45616 (-)
Gene ID: HRGMv2_3878_21_41
Type: CAZyme
Location: 45958 - 46689 (-)
Type: CAZyme
Location: 45958 - 46689 (-)
Gene ID: HRGMv2_3878_21_42
Type:
Location: 46694 - 48226 (-)
Type:
Location: 46694 - 48226 (-)
Gene ID: HRGMv2_3878_21_43
Type: TC
Location: 48273 - 50708 (-)
Type: TC
Location: 48273 - 50708 (-)
Gene ID: HRGMv2_3878_21_44
Type: pfam
Location: 50720 - 51490 (-)
Type: pfam
Location: 50720 - 51490 (-)
Gene ID: HRGMv2_3878_21_45
Type: TC
Location: 51546 - 52667 (-)
Type: TC
Location: 51546 - 52667 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Barnesiellaceae
Genus
Barnesiella
Species
Barnesiella merdipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.