Cluster: HRGMv2_3878_CGC24
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3878
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3878_17 | HRGMv2_3878_17_20 | 23847 | 24767 | + | 1.A.23.2.1 |
| pfam | HRGMv2_3878_17 | HRGMv2_3878_17_21 | 24911 | 25444 | + | Acetyltransf_1 | FR47 | Acetyltransf_3 | Acetyltransf_4 | Acetyltransf_7 | Acetyltransf_10 |
| pfam | HRGMv2_3878_17 | HRGMv2_3878_17_22 | 25694 | 27415 | + | DHH | DHHA1 | RecJ_OB |
| TC | HRGMv2_3878_17 | HRGMv2_3878_17_23 | 27622 | 29532 | + | 2.A.16.2.2 |
| TC | HRGMv2_3878_17 | HRGMv2_3878_17_24 | 29593 | 29958 | + | 1.E.14.1.4 |
| TC | HRGMv2_3878_17 | HRGMv2_3878_17_25 | 29955 | 30647 | + | 2.A.122.1.1 |
| pfam | HRGMv2_3878_17 | HRGMv2_3878_17_26 | 30936 | 31328 | - | DUF6016 | DUF6016 |
| CAZyme | HRGMv2_3878_17 | HRGMv2_3878_17_27 | 31333 | 32073 | - | GT2 |
| pfam | HRGMv2_3878_17 | HRGMv2_3878_17_28 | 32090 | 33220 | - | Epimerase_2 |
| pfam | HRGMv2_3878_17 | HRGMv2_3878_17_29 | 33250 | 34386 | - | Epimerase | Polysacc_synt_C |
| TC | HRGMv2_3878_17 | HRGMv2_3878_17_30 | 34399 | 35421 | - | 9.B.18.2.1 |
| NULL(UNKNOWN) | HRGMv2_3878_17 | HRGMv2_3878_17_31 | 35426 | 36496 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3878_17 | HRGMv2_3878_17_32 | 36523 | 37806 | - | GT4 |
| pfam | HRGMv2_3878_17 | HRGMv2_3878_17_33 | 37803 | 38960 | - | Glycos_transf_1 | Glyco_trans_4_4 | Glyco_trans_1_4 |
| pfam | HRGMv2_3878_17 | HRGMv2_3878_17_34 | 38963 | 40051 | - | EpsG |
| CAZyme | HRGMv2_3878_17 | HRGMv2_3878_17_35 | 40064 | 41308 | - | GT4 |
Gene ID: HRGMv2_3878_17_20
Type: TC
Location: 23847 - 24767 (+)
Type: TC
Location: 23847 - 24767 (+)
Gene ID: HRGMv2_3878_17_21
Type: pfam
Location: 24911 - 25444 (+)
Type: pfam
Location: 24911 - 25444 (+)
Gene ID: HRGMv2_3878_17_22
Type: pfam
Location: 25694 - 27415 (+)
Type: pfam
Location: 25694 - 27415 (+)
Gene ID: HRGMv2_3878_17_23
Type: TC
Location: 27622 - 29532 (+)
Type: TC
Location: 27622 - 29532 (+)
Gene ID: HRGMv2_3878_17_24
Type: TC
Location: 29593 - 29958 (+)
Type: TC
Location: 29593 - 29958 (+)
Gene ID: HRGMv2_3878_17_25
Type: TC
Location: 29955 - 30647 (+)
Type: TC
Location: 29955 - 30647 (+)
Gene ID: HRGMv2_3878_17_26
Type: pfam
Location: 30936 - 31328 (-)
Type: pfam
Location: 30936 - 31328 (-)
Gene ID: HRGMv2_3878_17_27
Type: CAZyme
Location: 31333 - 32073 (-)
Type: CAZyme
Location: 31333 - 32073 (-)
Gene ID: HRGMv2_3878_17_28
Type: pfam
Location: 32090 - 33220 (-)
Type: pfam
Location: 32090 - 33220 (-)
Gene ID: HRGMv2_3878_17_29
Type: pfam
Location: 33250 - 34386 (-)
Type: pfam
Location: 33250 - 34386 (-)
Gene ID: HRGMv2_3878_17_30
Type: TC
Location: 34399 - 35421 (-)
Type: TC
Location: 34399 - 35421 (-)
Gene ID: HRGMv2_3878_17_31
Type:
Location: 35426 - 36496 (-)
Type:
Location: 35426 - 36496 (-)
Gene ID: HRGMv2_3878_17_32
Type: CAZyme
Location: 36523 - 37806 (-)
Type: CAZyme
Location: 36523 - 37806 (-)
Gene ID: HRGMv2_3878_17_33
Type: pfam
Location: 37803 - 38960 (-)
Type: pfam
Location: 37803 - 38960 (-)
Gene ID: HRGMv2_3878_17_34
Type: pfam
Location: 38963 - 40051 (-)
Type: pfam
Location: 38963 - 40051 (-)
Gene ID: HRGMv2_3878_17_35
Type: CAZyme
Location: 40064 - 41308 (-)
Type: CAZyme
Location: 40064 - 41308 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Barnesiellaceae
Genus
Barnesiella
Species
Barnesiella merdipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.