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Cluster: HRGMv2_3878_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3878_13 HRGMv2_3878_13_2 289 2607 + 8.A.3.3.4
NULL(UNKNOWN) HRGMv2_3878_13 HRGMv2_3878_13_3 2634 3887 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3878_13 HRGMv2_3878_13_4 3884 5305 + Polysacc_synt
CAZyme HRGMv2_3878_13 HRGMv2_3878_13_5 5366 6475 + GT4
pfam HRGMv2_3878_13 HRGMv2_3878_13_6 6485 7459 + Acyl_transf_3
CAZyme HRGMv2_3878_13 HRGMv2_3878_13_7 7474 8691 + GT4
pfam HRGMv2_3878_13 HRGMv2_3878_13_8 8749 9813 + Radical_SAM | SPASM
CAZyme HRGMv2_3878_13 HRGMv2_3878_13_9 9839 10924 + GT4
Gene ID: HRGMv2_3878_13_2
Type: TC
Location: 289 - 2607 (+)
Gene ID: HRGMv2_3878_13_3
Type:
Location: 2634 - 3887 (+)
Gene ID: HRGMv2_3878_13_4
Type: pfam
Location: 3884 - 5305 (+)
Gene ID: HRGMv2_3878_13_5
Type: CAZyme
Location: 5366 - 6475 (+)
Gene ID: HRGMv2_3878_13_6
Type: pfam
Location: 6485 - 7459 (+)
Gene ID: HRGMv2_3878_13_7
Type: CAZyme
Location: 7474 - 8691 (+)
Gene ID: HRGMv2_3878_13_8
Type: pfam
Location: 8749 - 9813 (+)
Gene ID: HRGMv2_3878_13_9
Type: CAZyme
Location: 9839 - 10924 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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