PROTEIN: HRGMv2_3878_13_3
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Protein File & Metadata
Source:
HRGMv2_3878_13_3.pdb
Genome ID:
Protein ID:
HRGMv2_3878_13_3
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Protein Sequence
MVSLNKIFYG LFVLMLIVGV YTYQLMWFKS SDELITLLLA LLCMIDILGN HNHQRYKGLF 60 FVVGVMLFYV LYSLVFVHYN TAKAIMYDFF IQLKPFIAFY VAYSMGVRFD ASQKRFLKRL 120 SIVLSVIMFV IIAAGFGEVA FFHVAYFGII STILFLIYYY CTCQNQTRKD RIIMLLMLAV 180 GLFSTRAKFY GFFVVAIYIL FMYKPGILSR VKLKQWLMMV VVFCAVLYVA WGKINYYFIS 240 SGFFSGAEDM DDSFARAVLY VRSPQVFIDH PFLGSGLASY ATFSSGIVSY SQLYKEYGID 300 EVWGLLEDDC PFVSDTYFPE LVQFGLVGII LFFYFWIWVY RKIKPSVIDS YAISLYKGGI 360 LIVLFLAIES IAGSVFLQGS GIVAMILLGF IVRDISVIKE RHALAEKQAK TERQIEV 417
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs -
AFDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-Q2G1J9-F1-model_v4 | 4 | 405 | 1 | 388 | 0.6417 |
0.6887 |
| AF-X8F0V5-F1-model_v4 | 2 | 404 | 39 | 463 | 0.6174 |
0.6985 |
Structural Homologs -
CAZyme3D-Whole
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| AF-Q4JZZ9-F1-model_v4 | GT4 | 6 | 403 | 6 | 407 | 0.6454 |
0.6921 |
| AF-A0A212QE91-F1-model_v4 | GT2 | 1 | 417 | 1 | 486 | 0.5855 |
0.7306 |
| AF-A0A0K1UBS5-F1-model_v4 | GT2 | 1 | 417 | 1 | 486 | 0.5821 |
0.7257 |
| AF-E4PMS8-F1-model_v4 | GT2 | 1 | 417 | 1 | 487 | 0.5779 |
0.721 |
| AF-A0A517MXC4-F1-model_v4 | GT26 | 1 | 417 | 18 | 465 | 0.5712 |
0.7415 |
| A0A9Q9IL13 | GT4 | 1 | 417 | 14 | 555 | 0.5677 |
0.7899 |
| AF-A0A3S9E5E2-F1-model_v4 | GT25 | 1 | 404 | 264 | 689 | 0.5567 |
0.7232 |
| AF-F7YBV0-F1-model_v4 | GT25 | 1 | 404 | 264 | 689 | 0.5538 |
0.7196 |
| AF-B8DZR6-F1-model_v4 | GT9 | 1 | 412 | 39 | 477 | 0.5463 |
0.7254 |
| AF-D5MJ04-F1-model_v4 | GT9 | 1 | 417 | 21 | 452 | 0.5461 |
0.7156 |
Structural Homologs -
CAZyme-ID50
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| A2S058 | GH39 | 1 | 404 | 3 | 403 | 0.652 |
0.7004 |
| Q4JZZ9 | GT4 | 6 | 403 | 6 | 407 | 0.6454 |
0.6921 |
| A0A517MXC4 | GT26 | 1 | 417 | 18 | 465 | 0.5712 |
0.7415 |
| A0A9Q9IL13 | GT4 | 1 | 417 | 14 | 555 | 0.5677 |
0.7899 |
| D5MJ04 | GT9 | 1 | 417 | 21 | 452 | 0.5461 |
0.7156 |
| B5YD26 | GT9 | 1 | 413 | 39 | 586 | 0.5441 |
0.721 |
| UII34295.1 | GT4 | 1 | 417 | 11 | 778 | 0.5305 |
0.6977 |
| A0A0C5WHY3 | GT4 | 1 | 417 | 1 | 673 | 0.5206 |
0.6778 |
Structural Homologs - PDB
No structural homologs were found using the cutoff E-value 1e-5 and TM-score threshold > 0.45.
Structural Homologs -
SwissProt
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-O32270-F1-model_v4 | 1 | 412 | 59 | 488 | 0.6988 |
0.7803 |
| AF-Q6F7F9-F1-model_v4 | 1 | 400 | 5 | 405 | 0.5748 |
0.6897 |
| AF-Q6FFS6-F1-model_v4 | 1 | 400 | 17 | 423 | 0.5674 |
0.691 |