Cluster: HRGMv2_3877_CGC19
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3877
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3877_12 | HRGMv2_3877_12_28 | 31836 | 32978 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_3877_12 | HRGMv2_3877_12_29 | 33162 | 33797 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3877_12 | HRGMv2_3877_12_30 | 33800 | 35167 | - | 2.A.1.53.5 |
| STP | HRGMv2_3877_12 | HRGMv2_3877_12_31 | 35184 | 37172 | - | TPR_1 | TPR_1 | TPR_1 | TPR_1 | TPR_1 | TPR_1 |
| pfam | HRGMv2_3877_12 | HRGMv2_3877_12_32 | 37326 | 38207 | - | GTP_EFTU | Ras | MMR_HSR1 | FeoB_N | KH_2 | PduV-EutP |
| TC | HRGMv2_3877_12 | HRGMv2_3877_12_33 | 38437 | 39768 | - | 3.A.5.1.1 |
Gene ID: HRGMv2_3877_12_28
Type: CAZyme
Location: 31836 - 32978 (+)
Type: CAZyme
Location: 31836 - 32978 (+)
Gene ID: HRGMv2_3877_12_29
Type:
Location: 33162 - 33797 (-)
Type:
Location: 33162 - 33797 (-)
Gene ID: HRGMv2_3877_12_30
Type: TC
Location: 33800 - 35167 (-)
Type: TC
Location: 33800 - 35167 (-)
Gene ID: HRGMv2_3877_12_31
Type: STP
Location: 35184 - 37172 (-)
Type: STP
Location: 35184 - 37172 (-)
Gene ID: HRGMv2_3877_12_32
Type: pfam
Location: 37326 - 38207 (-)
Type: pfam
Location: 37326 - 38207 (-)
Gene ID: HRGMv2_3877_12_33
Type: TC
Location: 38437 - 39768 (-)
Type: TC
Location: 38437 - 39768 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes cottocaccae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.