Cluster: HRGMv2_3877_CGC18
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3877
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3877_11 | HRGMv2_3877_11_38 | 44187 | 45179 | + | GH130_3 |
| pfam | HRGMv2_3877_11 | HRGMv2_3877_11_39 | 45176 | 46042 | + | Exo_endo_phos |
| TC | HRGMv2_3877_11 | HRGMv2_3877_11_40 | 46141 | 49434 | + | 1.B.14.6.1 |
Gene ID: HRGMv2_3877_11_38
Type: CAZyme
Location: 44187 - 45179 (+)
Type: CAZyme
Location: 44187 - 45179 (+)
Gene ID: HRGMv2_3877_11_39
Type: pfam
Location: 45176 - 46042 (+)
Type: pfam
Location: 45176 - 46042 (+)
Gene ID: HRGMv2_3877_11_40
Type: TC
Location: 46141 - 49434 (+)
Type: TC
Location: 46141 - 49434 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes cottocaccae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3877_11_38 | vegan > omnivore | 2.81533 | 0.04678 |