Cluster: HRGMv2_3876_CGC30
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: pectin
- Genome ID: HRGMv2_3876
- CGC Family ID: CGCFAM_00540
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3876_60 | HRGMv2_3876_60_4 | 4290 | 7226 | - | 1.B.14.6.1 |
| STP | HRGMv2_3876_60 | HRGMv2_3876_60_5 | 7275 | 8198 | - | PfkB |
| TF | HRGMv2_3876_60 | HRGMv2_3876_60_6 | 8321 | 9418 | + | LacI |
| TC | HRGMv2_3876_60 | HRGMv2_3876_60_7 | 9544 | 10701 | + | 2.A.1.2.14 |
| TF | HRGMv2_3876_60 | HRGMv2_3876_60_8 | 10774 | 13191 | + | HTH_AraC |
| CAZyme | HRGMv2_3876_60 | HRGMv2_3876_60_9 | 13312 | 18204 | + | CE12 | CE8 |
Gene ID: HRGMv2_3876_60_4
Type: TC
Location: 4290 - 7226 (-)
Type: TC
Location: 4290 - 7226 (-)
Gene ID: HRGMv2_3876_60_5
Type: STP
Location: 7275 - 8198 (-)
Type: STP
Location: 7275 - 8198 (-)
Gene ID: HRGMv2_3876_60_6
Type: TF
Location: 8321 - 9418 (+)
Type: TF
Location: 8321 - 9418 (+)
Gene ID: HRGMv2_3876_60_7
Type: TC
Location: 9544 - 10701 (+)
Type: TC
Location: 9544 - 10701 (+)
Gene ID: HRGMv2_3876_60_8
Type: TF
Location: 10774 - 13191 (+)
Type: TF
Location: 10774 - 13191 (+)
Gene ID: HRGMv2_3876_60_9
Type: CAZyme
Location: 13312 - 18204 (+)
Type: CAZyme
Location: 13312 - 18204 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
UBA7173
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.