Cluster: HRGMv2_3875_CGC9
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3875
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3875_5 | HRGMv2_3875_5_29 | 30645 | 32348 | + | 2.A.81.1.1 |
| STP | HRGMv2_3875_5 | HRGMv2_3875_5_30 | 32405 | 34042 | + | Aminotran_1_2 |
| CAZyme | HRGMv2_3875_5 | HRGMv2_3875_5_31 | 34136 | 36802 | - | CBM6 | GH43_2 |
| pfam | HRGMv2_3875_5 | HRGMv2_3875_5_32 | 36865 | 37941 | - | AI-2E_transport |
| NULL(UNKNOWN) | HRGMv2_3875_5 | HRGMv2_3875_5_33 | 38012 | 38674 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3875_5 | HRGMv2_3875_5_34 | 38711 | 39691 | - | 2.A.69.3.5 |
| pfam | HRGMv2_3875_5 | HRGMv2_3875_5_35 | 39757 | 41508 | - | TPP_enzyme_M | TPP_enzyme_C | TPP_enzyme_N |
| pfam | HRGMv2_3875_5 | HRGMv2_3875_5_36 | 41514 | 42803 | - | CoA_transf_3 |
| TC | HRGMv2_3875_5 | HRGMv2_3875_5_37 | 43028 | 44434 | + | 2.A.6.2.42 |
| TC | HRGMv2_3875_5 | HRGMv2_3875_5_38 | 44452 | 45579 | + | 2.A.6.2.25 |
| TC | HRGMv2_3875_5 | HRGMv2_3875_5_39 | 45593 | 48760 | + | 2.A.6.2.16 |
Gene ID: HRGMv2_3875_5_29
Type: TC
Location: 30645 - 32348 (+)
Type: TC
Location: 30645 - 32348 (+)
Gene ID: HRGMv2_3875_5_30
Type: STP
Location: 32405 - 34042 (+)
Type: STP
Location: 32405 - 34042 (+)
Gene ID: HRGMv2_3875_5_31
Type: CAZyme
Location: 34136 - 36802 (-)
Type: CAZyme
Location: 34136 - 36802 (-)
Gene ID: HRGMv2_3875_5_32
Type: pfam
Location: 36865 - 37941 (-)
Type: pfam
Location: 36865 - 37941 (-)
Gene ID: HRGMv2_3875_5_33
Type:
Location: 38012 - 38674 (-)
Type:
Location: 38012 - 38674 (-)
Gene ID: HRGMv2_3875_5_34
Type: TC
Location: 38711 - 39691 (-)
Type: TC
Location: 38711 - 39691 (-)
Gene ID: HRGMv2_3875_5_35
Type: pfam
Location: 39757 - 41508 (-)
Type: pfam
Location: 39757 - 41508 (-)
Gene ID: HRGMv2_3875_5_36
Type: pfam
Location: 41514 - 42803 (-)
Type: pfam
Location: 41514 - 42803 (-)
Gene ID: HRGMv2_3875_5_37
Type: TC
Location: 43028 - 44434 (+)
Type: TC
Location: 43028 - 44434 (+)
Gene ID: HRGMv2_3875_5_38
Type: TC
Location: 44452 - 45579 (+)
Type: TC
Location: 44452 - 45579 (+)
Gene ID: HRGMv2_3875_5_39
Type: TC
Location: 45593 - 48760 (+)
Type: TC
Location: 45593 - 48760 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.