Cluster: HRGMv2_3875_CGC25
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: HRGMv2_3875
- CGC Family ID: CGCFAM_00001
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3875_35 | HRGMv2_3875_35_5 | 3354 | 4196 | + | 1.A.30.1.4 |
| NULL(UNKNOWN) | HRGMv2_3875_35 | HRGMv2_3875_35_6 | 4395 | 8009 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_3875_35 | HRGMv2_3875_35_7 | 8182 | 10566 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3875_35 | HRGMv2_3875_35_8 | 10658 | 12955 | - | GH3 |
| CAZyme | HRGMv2_3875_35 | HRGMv2_3875_35_9 | 12952 | 15189 | - | GH3 |
| CAZyme | HRGMv2_3875_35 | HRGMv2_3875_35_10 | 15195 | 16433 | - | GH5_46 |
| CAZyme | HRGMv2_3875_35 | HRGMv2_3875_35_11 | 16497 | 17642 | - | GH16_3 |
| NULL(UNKNOWN) | HRGMv2_3875_35 | HRGMv2_3875_35_12 | 17764 | 19167 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3875_35 | HRGMv2_3875_35_13 | 19180 | 20697 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3875_35 | HRGMv2_3875_35_14 | 20730 | 23876 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_3875_35_5
Type: TC
Location: 3354 - 4196 (+)
Type: TC
Location: 3354 - 4196 (+)
Gene ID: HRGMv2_3875_35_6
Type:
Location: 4395 - 8009 (+)
Type:
Location: 4395 - 8009 (+)
Gene ID: HRGMv2_3875_35_7
Type:
Location: 8182 - 10566 (+)
Type:
Location: 8182 - 10566 (+)
Gene ID: HRGMv2_3875_35_8
Type: CAZyme
Location: 10658 - 12955 (-)
Type: CAZyme
Location: 10658 - 12955 (-)
Gene ID: HRGMv2_3875_35_9
Type: CAZyme
Location: 12952 - 15189 (-)
Type: CAZyme
Location: 12952 - 15189 (-)
Gene ID: HRGMv2_3875_35_10
Type: CAZyme
Location: 15195 - 16433 (-)
Type: CAZyme
Location: 15195 - 16433 (-)
Gene ID: HRGMv2_3875_35_11
Type: CAZyme
Location: 16497 - 17642 (-)
Type: CAZyme
Location: 16497 - 17642 (-)
Gene ID: HRGMv2_3875_35_12
Type:
Location: 17764 - 19167 (-)
Type:
Location: 17764 - 19167 (-)
Gene ID: HRGMv2_3875_35_13
Type: pfam
Location: 19180 - 20697 (-)
Type: pfam
Location: 19180 - 20697 (-)
Gene ID: HRGMv2_3875_35_14
Type: TC
Location: 20730 - 23876 (-)
Type: TC
Location: 20730 - 23876 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.