Cluster: HRGMv2_3875_CGC21
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate: alpha-glucan
- Genome ID: HRGMv2_3875
- CGC Family ID: CGCFAM_00175
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3875_23 | HRGMv2_3875_23_2 | 2290 | 5235 | + | 1.B.14.6.1 |
| pfam | HRGMv2_3875_23 | HRGMv2_3875_23_3 | 5251 | 7044 | + | SusD_RagB |
| pfam | HRGMv2_3875_23 | HRGMv2_3875_23_4 | 7053 | 8504 | + | CBM26 | CBM26 |
| CAZyme | HRGMv2_3875_23 | HRGMv2_3875_23_5 | 8501 | 9835 | + | GH13 |
| CAZyme | HRGMv2_3875_23 | HRGMv2_3875_23_6 | 9857 | 11953 | + | GH97 |
| CAZyme | HRGMv2_3875_23 | HRGMv2_3875_23_7 | 12056 | 13012 | - | GT2 |
Gene ID: HRGMv2_3875_23_2
Type: TC
Location: 2290 - 5235 (+)
Type: TC
Location: 2290 - 5235 (+)
Gene ID: HRGMv2_3875_23_3
Type: pfam
Location: 5251 - 7044 (+)
Type: pfam
Location: 5251 - 7044 (+)
Gene ID: HRGMv2_3875_23_4
Type: pfam
Location: 7053 - 8504 (+)
Type: pfam
Location: 7053 - 8504 (+)
Gene ID: HRGMv2_3875_23_5
Type: CAZyme
Location: 8501 - 9835 (+)
Type: CAZyme
Location: 8501 - 9835 (+)
Gene ID: HRGMv2_3875_23_6
Type: CAZyme
Location: 9857 - 11953 (+)
Type: CAZyme
Location: 9857 - 11953 (+)
Gene ID: HRGMv2_3875_23_7
Type: CAZyme
Location: 12056 - 13012 (-)
Type: CAZyme
Location: 12056 - 13012 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.