Cluster: HRGMv2_3875_CGC17
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3875
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3875_18 | HRGMv2_3875_18_16 | 19618 | 21600 | - | 1.B.6.1.14 |
| pfam | HRGMv2_3875_18 | HRGMv2_3875_18_17 | 21655 | 22254 | - | ADK | AAA_17 | AAA_18 | AAA_33 |
| STP | HRGMv2_3875_18 | HRGMv2_3875_18_18 | 22301 | 22846 | - | Pribosyltran |
| TC | HRGMv2_3875_18 | HRGMv2_3875_18_19 | 23205 | 23840 | + | 8.A.58.2.9 |
| pfam | HRGMv2_3875_18 | HRGMv2_3875_18_20 | 23843 | 24394 | + | CD225 | GYF_2 |
| TC | HRGMv2_3875_18 | HRGMv2_3875_18_21 | 24481 | 25503 | + | 9.B.18.2.1 |
| STP | HRGMv2_3875_18 | HRGMv2_3875_18_22 | 25516 | 26679 | + | Aminotran_1_2 |
| pfam | HRGMv2_3875_18 | HRGMv2_3875_18_23 | 26676 | 27845 | + | Acetyltransf_1 | CTP_transf_3 | Acetyltransf_3 |
| TC | HRGMv2_3875_18 | HRGMv2_3875_18_24 | 28127 | 30139 | + | 3.A.18.1.1 |
| pfam | HRGMv2_3875_18 | HRGMv2_3875_18_25 | 30167 | 30835 | + | DUF3256 |
| peptidase | HRGMv2_3875_18 | HRGMv2_3875_18_26 | 31343 | 32941 | + | M26.UPW |
| CAZyme | HRGMv2_3875_18 | HRGMv2_3875_18_27 | 32955 | 36128 | + | GH13_19 |
Gene ID: HRGMv2_3875_18_16
Type: TC
Location: 19618 - 21600 (-)
Type: TC
Location: 19618 - 21600 (-)
Gene ID: HRGMv2_3875_18_17
Type: pfam
Location: 21655 - 22254 (-)
Type: pfam
Location: 21655 - 22254 (-)
Gene ID: HRGMv2_3875_18_18
Type: STP
Location: 22301 - 22846 (-)
Type: STP
Location: 22301 - 22846 (-)
Gene ID: HRGMv2_3875_18_19
Type: TC
Location: 23205 - 23840 (+)
Type: TC
Location: 23205 - 23840 (+)
Gene ID: HRGMv2_3875_18_20
Type: pfam
Location: 23843 - 24394 (+)
Type: pfam
Location: 23843 - 24394 (+)
Gene ID: HRGMv2_3875_18_21
Type: TC
Location: 24481 - 25503 (+)
Type: TC
Location: 24481 - 25503 (+)
Gene ID: HRGMv2_3875_18_22
Type: STP
Location: 25516 - 26679 (+)
Type: STP
Location: 25516 - 26679 (+)
Gene ID: HRGMv2_3875_18_23
Type: pfam
Location: 26676 - 27845 (+)
Type: pfam
Location: 26676 - 27845 (+)
Gene ID: HRGMv2_3875_18_24
Type: TC
Location: 28127 - 30139 (+)
Type: TC
Location: 28127 - 30139 (+)
Gene ID: HRGMv2_3875_18_25
Type: pfam
Location: 30167 - 30835 (+)
Type: pfam
Location: 30167 - 30835 (+)
Gene ID: HRGMv2_3875_18_26
Type: peptidase
Location: 31343 - 32941 (+)
Type: peptidase
Location: 31343 - 32941 (+)
Gene ID: HRGMv2_3875_18_27
Type: CAZyme
Location: 32955 - 36128 (+)
Type: CAZyme
Location: 32955 - 36128 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.