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Cluster: HRGMv2_3875_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3875_1 HRGMv2_3875_1_15 12689 13000 + 3.D.1.2.1
TC HRGMv2_3875_1 HRGMv2_3875_1_16 13003 14988 + 3.D.9.1.1
TC HRGMv2_3875_1 HRGMv2_3875_1_17 15017 16531 + 3.D.1.5.1
TC HRGMv2_3875_1 HRGMv2_3875_1_18 16576 18048 + 3.D.9.1.1
TC HRGMv2_3875_1 HRGMv2_3875_1_19 18163 19671 + 2.A.3.2.7
CAZyme HRGMv2_3875_1 HRGMv2_3875_1_20 20215 21693 - GH57
CAZyme HRGMv2_3875_1 HRGMv2_3875_1_21 21711 22970 - GT4
CAZyme HRGMv2_3875_1 HRGMv2_3875_1_22 22980 24941 - GH133
pfam HRGMv2_3875_1 HRGMv2_3875_1_23 25147 26634 - Virul_fac_BrkB
TC HRGMv2_3875_1 HRGMv2_3875_1_24 27081 27746 - 2.A.115.2.14
Gene ID: HRGMv2_3875_1_15
Type: TC
Location: 12689 - 13000 (+)
Gene ID: HRGMv2_3875_1_16
Type: TC
Location: 13003 - 14988 (+)
Gene ID: HRGMv2_3875_1_17
Type: TC
Location: 15017 - 16531 (+)
Gene ID: HRGMv2_3875_1_18
Type: TC
Location: 16576 - 18048 (+)
Gene ID: HRGMv2_3875_1_19
Type: TC
Location: 18163 - 19671 (+)
Gene ID: HRGMv2_3875_1_20
Type: CAZyme
Location: 20215 - 21693 (-)
Gene ID: HRGMv2_3875_1_21
Type: CAZyme
Location: 21711 - 22970 (-)
Gene ID: HRGMv2_3875_1_22
Type: CAZyme
Location: 22980 - 24941 (-)
Gene ID: HRGMv2_3875_1_23
Type: pfam
Location: 25147 - 26634 (-)
Gene ID: HRGMv2_3875_1_24
Type: TC
Location: 27081 - 27746 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Muribaculaceae
→
Genus
Lepagella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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