Cluster: HRGMv2_3874_CGC34
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3874
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3874_24 | HRGMv2_3874_24_14 | 9521 | 12850 | + | 1.B.14.6.13 |
| TC | HRGMv2_3874_24 | HRGMv2_3874_24_15 | 12867 | 14450 | + | 8.A.46.2.1 |
| CAZyme | HRGMv2_3874_24 | HRGMv2_3874_24_16 | 14471 | 15598 | + | GH18 |
| pfam | HRGMv2_3874_24 | HRGMv2_3874_24_17 | 15612 | 16862 | + | BT_3987-like_N | Laminin_G_3 |
| sulfatase | HRGMv2_3874_24 | HRGMv2_3874_24_18 | 16948 | 18528 | + | S1_11 |
| CAZyme | HRGMv2_3874_24 | HRGMv2_3874_24_19 | 18535 | 20826 | + | GH20 |
Gene ID: HRGMv2_3874_24_14
Type: TC
Location: 9521 - 12850 (+)
Type: TC
Location: 9521 - 12850 (+)
Gene ID: HRGMv2_3874_24_15
Type: TC
Location: 12867 - 14450 (+)
Type: TC
Location: 12867 - 14450 (+)
Gene ID: HRGMv2_3874_24_16
Type: CAZyme
Location: 14471 - 15598 (+)
Type: CAZyme
Location: 14471 - 15598 (+)
Gene ID: HRGMv2_3874_24_17
Type: pfam
Location: 15612 - 16862 (+)
Type: pfam
Location: 15612 - 16862 (+)
Gene ID: HRGMv2_3874_24_18
Type: sulfatase
Location: 16948 - 18528 (+)
Type: sulfatase
Location: 16948 - 18528 (+)
Gene ID: HRGMv2_3874_24_19
Type: CAZyme
Location: 18535 - 20826 (+)
Type: CAZyme
Location: 18535 - 20826 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp944321185
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3874_24_14 | vegan > omnivore | 1.99831 | 0.01191 |
| HRGMv2_3874_24_15 | vegan > omnivore | 2.61331 | 0.04878 |