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Cluster: HRGMv2_3874_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3874_8 HRGMv2_3874_8_54 63863 65857 - GH97
CAZyme HRGMv2_3874_8 HRGMv2_3874_8_55 66003 67748 - GH43_3
pfam HRGMv2_3874_8 HRGMv2_3874_8_56 67759 70137 - SusE | SusE
CAZyme HRGMv2_3874_8 HRGMv2_3874_8_57 70184 73168 - GH115
CAZyme HRGMv2_3874_8 HRGMv2_3874_8_58 73179 74597 - GH125
pfam HRGMv2_3874_8 HRGMv2_3874_8_59 74606 75781 - SusE
CAZyme HRGMv2_3874_8 HRGMv2_3874_8_60 75796 77052 - GH76
pfam HRGMv2_3874_8 HRGMv2_3874_8_61 77067 78272 - SusE
pfam HRGMv2_3874_8 HRGMv2_3874_8_62 78266 79924 - SusD_RagB | SusD-like_3
TC HRGMv2_3874_8 HRGMv2_3874_8_63 79941 83072 - 1.B.14.6.1
TF HRGMv2_3874_8 HRGMv2_3874_8_64 83257 87396 + 0035607
pfam HRGMv2_3874_8 HRGMv2_3874_8_65 87677 89083 + Metallophos | MetallophosC | MetallophosN
TC HRGMv2_3874_8 HRGMv2_3874_8_66 89314 92205 - 1.B.14.12.2
Gene ID: HRGMv2_3874_8_54
Type: CAZyme
Location: 63863 - 65857 (-)
Gene ID: HRGMv2_3874_8_55
Type: CAZyme
Location: 66003 - 67748 (-)
Gene ID: HRGMv2_3874_8_56
Type: pfam
Location: 67759 - 70137 (-)
Gene ID: HRGMv2_3874_8_57
Type: CAZyme
Location: 70184 - 73168 (-)
Gene ID: HRGMv2_3874_8_58
Type: CAZyme
Location: 73179 - 74597 (-)
Gene ID: HRGMv2_3874_8_59
Type: pfam
Location: 74606 - 75781 (-)
Gene ID: HRGMv2_3874_8_60
Type: CAZyme
Location: 75796 - 77052 (-)
Gene ID: HRGMv2_3874_8_61
Type: pfam
Location: 77067 - 78272 (-)
Gene ID: HRGMv2_3874_8_62
Type: pfam
Location: 78266 - 79924 (-)
Gene ID: HRGMv2_3874_8_63
Type: TC
Location: 79941 - 83072 (-)
Gene ID: HRGMv2_3874_8_64
Type: TF
Location: 83257 - 87396 (+)
Gene ID: HRGMv2_3874_8_65
Type: pfam
Location: 87677 - 89083 (+)
Gene ID: HRGMv2_3874_8_66
Type: TC
Location: 89314 - 92205 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3874_8_54 vegan > omnivore 2.19074 0.00566

🧭 Explore Read Mapping of CGC

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