Cluster: HRGMv2_3872_CGC7
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_3872
- CGC Family ID: CGCFAM_00321
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3872_14 | HRGMv2_3872_14_7 | 4983 | 5975 | - | 2.A.7.6.1 |
| pfam | HRGMv2_3872_14 | HRGMv2_3872_14_8 | 5975 | 7228 | - | RhaA |
| pfam | HRGMv2_3872_14 | HRGMv2_3872_14_9 | 7225 | 8583 | - | FGGY_N | FGGY_C |
| CAZyme | HRGMv2_3872_14 | HRGMv2_3872_14_10 | 8635 | 10626 | - | GH97 |
| CAZyme | HRGMv2_3872_14 | HRGMv2_3872_14_11 | 10863 | 13463 | - | GH175 | GH37 |
| CAZyme | HRGMv2_3872_14 | HRGMv2_3872_14_12 | 13475 | 15298 | - | GH2 |
| CAZyme | HRGMv2_3872_14 | HRGMv2_3872_14_13 | 15431 | 17989 | - | GH78 |
| CAZyme | HRGMv2_3872_14 | HRGMv2_3872_14_14 | 18048 | 20162 | - | GH97 |
| NULL(UNKNOWN) | HRGMv2_3872_14 | HRGMv2_3872_14_15 | 20313 | 22070 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_3872_14 | HRGMv2_3872_14_16 | 22067 | 22519 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3872_14 | HRGMv2_3872_14_17 | 22680 | 25328 | - | GH43_18 |
| NULL(UNKNOWN) | HRGMv2_3872_14 | HRGMv2_3872_14_18 | 25360 | 26748 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3872_14 | HRGMv2_3872_14_19 | 26755 | 27720 | - | GH43_18 |
| pfam | HRGMv2_3872_14 | HRGMv2_3872_14_20 | 27750 | 29450 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3872_14 | HRGMv2_3872_14_21 | 29463 | 32870 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_3872_14_7
Type: TC
Location: 4983 - 5975 (-)
Type: TC
Location: 4983 - 5975 (-)
Gene ID: HRGMv2_3872_14_8
Type: pfam
Location: 5975 - 7228 (-)
Type: pfam
Location: 5975 - 7228 (-)
Gene ID: HRGMv2_3872_14_9
Type: pfam
Location: 7225 - 8583 (-)
Type: pfam
Location: 7225 - 8583 (-)
Gene ID: HRGMv2_3872_14_10
Type: CAZyme
Location: 8635 - 10626 (-)
Type: CAZyme
Location: 8635 - 10626 (-)
Gene ID: HRGMv2_3872_14_11
Type: CAZyme
Location: 10863 - 13463 (-)
Type: CAZyme
Location: 10863 - 13463 (-)
Gene ID: HRGMv2_3872_14_12
Type: CAZyme
Location: 13475 - 15298 (-)
Type: CAZyme
Location: 13475 - 15298 (-)
Gene ID: HRGMv2_3872_14_13
Type: CAZyme
Location: 15431 - 17989 (-)
Type: CAZyme
Location: 15431 - 17989 (-)
Gene ID: HRGMv2_3872_14_14
Type: CAZyme
Location: 18048 - 20162 (-)
Type: CAZyme
Location: 18048 - 20162 (-)
Gene ID: HRGMv2_3872_14_15
Type:
Location: 20313 - 22070 (-)
Type:
Location: 20313 - 22070 (-)
Gene ID: HRGMv2_3872_14_16
Type:
Location: 22067 - 22519 (-)
Type:
Location: 22067 - 22519 (-)
Gene ID: HRGMv2_3872_14_17
Type: CAZyme
Location: 22680 - 25328 (-)
Type: CAZyme
Location: 22680 - 25328 (-)
Gene ID: HRGMv2_3872_14_18
Type:
Location: 25360 - 26748 (-)
Type:
Location: 25360 - 26748 (-)
Gene ID: HRGMv2_3872_14_19
Type: CAZyme
Location: 26755 - 27720 (-)
Type: CAZyme
Location: 26755 - 27720 (-)
Gene ID: HRGMv2_3872_14_20
Type: pfam
Location: 27750 - 29450 (-)
Type: pfam
Location: 27750 - 29450 (-)
Gene ID: HRGMv2_3872_14_21
Type: TC
Location: 29463 - 32870 (-)
Type: TC
Location: 29463 - 32870 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.