Cluster: HRGMv2_3872_CGC26
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3872
- CGC Family ID: CGCFAM_03997
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3872_52 | HRGMv2_3872_52_6 | 4596 | 5495 | + | 2.A.7.3.36 |
| TF | HRGMv2_3872_52 | HRGMv2_3872_52_7 | 5508 | 6371 | - | HTH_AraC |
| pfam | HRGMv2_3872_52 | HRGMv2_3872_52_8 | 6624 | 9164 | + | Ribonuc_red_lgN | Ribonuc_red_lgC |
| CAZyme | HRGMv2_3872_52 | HRGMv2_3872_52_9 | 9207 | 11879 | + | CBM20 | CBM20 | GH77 |
| NULL(UNKNOWN) | HRGMv2_3872_52 | HRGMv2_3872_52_10 | 11823 | 11969 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_3872_52 | HRGMv2_3872_52_11 | 12839 | 12997 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3872_52 | HRGMv2_3872_52_12 | 12987 | 14696 | - | GH13_19 |
Gene ID: HRGMv2_3872_52_6
Type: TC
Location: 4596 - 5495 (+)
Type: TC
Location: 4596 - 5495 (+)
Gene ID: HRGMv2_3872_52_7
Type: TF
Location: 5508 - 6371 (-)
Type: TF
Location: 5508 - 6371 (-)
Gene ID: HRGMv2_3872_52_8
Type: pfam
Location: 6624 - 9164 (+)
Type: pfam
Location: 6624 - 9164 (+)
Gene ID: HRGMv2_3872_52_9
Type: CAZyme
Location: 9207 - 11879 (+)
Type: CAZyme
Location: 9207 - 11879 (+)
Gene ID: HRGMv2_3872_52_10
Type:
Location: 11823 - 11969 (-)
Type:
Location: 11823 - 11969 (-)
Gene ID: HRGMv2_3872_52_11
Type:
Location: 12839 - 12997 (-)
Type:
Location: 12839 - 12997 (-)
Gene ID: HRGMv2_3872_52_12
Type: CAZyme
Location: 12987 - 14696 (-)
Type: CAZyme
Location: 12987 - 14696 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.