Cluster: HRGMv2_3872_CGC24
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate: fructan
- Genome ID: HRGMv2_3872
- CGC Family ID: CGCFAM_00017
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3872_48 | HRGMv2_3872_48_2 | 402 | 2456 | - | GH154 |
| STP | HRGMv2_3872_48 | HRGMv2_3872_48_3 | 2608 | 3489 | - | PfkB |
| TC | HRGMv2_3872_48 | HRGMv2_3872_48_4 | 3502 | 4686 | - | 2.A.1.7.17 |
| CAZyme | HRGMv2_3872_48 | HRGMv2_3872_48_5 | 4698 | 6491 | - | GH32 |
| NULL(UNKNOWN) | HRGMv2_3872_48 | HRGMv2_3872_48_6 | 6511 | 6618 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_3872_48 | HRGMv2_3872_48_7 | 6753 | 9476 | + | HTH_AraC |
| TC | HRGMv2_3872_48 | HRGMv2_3872_48_8 | 9640 | 12729 | + | 1.B.14.6.1 |
| pfam | HRGMv2_3872_48 | HRGMv2_3872_48_9 | 12741 | 14471 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_3872_48 | HRGMv2_3872_48_10 | 14484 | 15857 | + | DUF4960 |
| CAZyme | HRGMv2_3872_48 | HRGMv2_3872_48_11 | 15874 | 17403 | + | GH32 |
| NULL(UNKNOWN) | HRGMv2_3872_48 | HRGMv2_3872_48_12 | 17463 | 18422 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3872_48 | HRGMv2_3872_48_13 | 18648 | 20156 | + | GH43_19 | GH43_34 |
Gene ID: HRGMv2_3872_48_2
Type: CAZyme
Location: 402 - 2456 (-)
Type: CAZyme
Location: 402 - 2456 (-)
Gene ID: HRGMv2_3872_48_3
Type: STP
Location: 2608 - 3489 (-)
Type: STP
Location: 2608 - 3489 (-)
Gene ID: HRGMv2_3872_48_4
Type: TC
Location: 3502 - 4686 (-)
Type: TC
Location: 3502 - 4686 (-)
Gene ID: HRGMv2_3872_48_5
Type: CAZyme
Location: 4698 - 6491 (-)
Type: CAZyme
Location: 4698 - 6491 (-)
Gene ID: HRGMv2_3872_48_6
Type:
Location: 6511 - 6618 (-)
Type:
Location: 6511 - 6618 (-)
Gene ID: HRGMv2_3872_48_7
Type: TF
Location: 6753 - 9476 (+)
Type: TF
Location: 6753 - 9476 (+)
Gene ID: HRGMv2_3872_48_8
Type: TC
Location: 9640 - 12729 (+)
Type: TC
Location: 9640 - 12729 (+)
Gene ID: HRGMv2_3872_48_9
Type: pfam
Location: 12741 - 14471 (+)
Type: pfam
Location: 12741 - 14471 (+)
Gene ID: HRGMv2_3872_48_10
Type: pfam
Location: 14484 - 15857 (+)
Type: pfam
Location: 14484 - 15857 (+)
Gene ID: HRGMv2_3872_48_11
Type: CAZyme
Location: 15874 - 17403 (+)
Type: CAZyme
Location: 15874 - 17403 (+)
Gene ID: HRGMv2_3872_48_12
Type:
Location: 17463 - 18422 (+)
Type:
Location: 17463 - 18422 (+)
Gene ID: HRGMv2_3872_48_13
Type: CAZyme
Location: 18648 - 20156 (+)
Type: CAZyme
Location: 18648 - 20156 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.