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Cluster: HRGMv2_3872_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3872_43 HRGMv2_3872_43_4 3662 5890 - GH3
pfam HRGMv2_3872_43 HRGMv2_3872_43_5 5901 7304 - FAD_binding_2 | GIDA | FAD_oxidored | NAD_binding_8
pfam HRGMv2_3872_43 HRGMv2_3872_43_6 7332 9005 - SusD_RagB | SusD-like_3
TC HRGMv2_3872_43 HRGMv2_3872_43_7 9037 12213 - 1.B.14.6.1
TF HRGMv2_3872_43 HRGMv2_3872_43_8 12499 16605 + HTH_AraC
CAZyme HRGMv2_3872_43 HRGMv2_3872_43_9 16825 17658 + GH16_3
NULL(UNKNOWN) HRGMv2_3872_43 HRGMv2_3872_43_10 17726 18199 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_3872_43 HRGMv2_3872_43_11 18204 18659 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3872_43 HRGMv2_3872_43_12 18663 19886 + GH16_3
Gene ID: HRGMv2_3872_43_4
Type: CAZyme
Location: 3662 - 5890 (-)
Gene ID: HRGMv2_3872_43_5
Type: pfam
Location: 5901 - 7304 (-)
Gene ID: HRGMv2_3872_43_6
Type: pfam
Location: 7332 - 9005 (-)
Gene ID: HRGMv2_3872_43_7
Type: TC
Location: 9037 - 12213 (-)
Gene ID: HRGMv2_3872_43_8
Type: TF
Location: 12499 - 16605 (+)
Gene ID: HRGMv2_3872_43_9
Type: CAZyme
Location: 16825 - 17658 (+)
Gene ID: HRGMv2_3872_43_10
Type:
Location: 17726 - 18199 (+)
Gene ID: HRGMv2_3872_43_11
Type:
Location: 18204 - 18659 (+)
Gene ID: HRGMv2_3872_43_12
Type: CAZyme
Location: 18663 - 19886 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Muribaculaceae
→
Genus
Lepagella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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