Cluster: HRGMv2_3870_CGC6
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_3870
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3870_2 | HRGMv2_3870_2_80 | 124695 | 125690 | - | 2.A.4.7.7 |
| sulfatase | HRGMv2_3870_2 | HRGMv2_3870_2_81 | 125828 | 127633 | + | S1_97 |
| CAZyme | HRGMv2_3870_2 | HRGMv2_3870_2_82 | 127687 | 128655 | - | GT2 |
| pfam | HRGMv2_3870_2 | HRGMv2_3870_2_83 | 128652 | 129050 | - | GtrA_DPMS_TM |
| CAZyme | HRGMv2_3870_2 | HRGMv2_3870_2_84 | 129040 | 130761 | - | GT83 |
| pfam | HRGMv2_3870_2 | HRGMv2_3870_2_85 | 130790 | 131803 | - | Glyco_transf_90 |
| CAZyme | HRGMv2_3870_2 | HRGMv2_3870_2_86 | 131912 | 132838 | + | GT8 |
| CAZyme | HRGMv2_3870_2 | HRGMv2_3870_2_87 | 132888 | 133784 | + | GT32 |
| CAZyme | HRGMv2_3870_2 | HRGMv2_3870_2_88 | 133861 | 134871 | - | GT2 |
| CAZyme | HRGMv2_3870_2 | HRGMv2_3870_2_89 | 135259 | 135468 | - | GT2 |
| pfam | HRGMv2_3870_2 | HRGMv2_3870_2_90 | 135465 | 136376 | - | Lip_A_acyltrans |
| TC | HRGMv2_3870_2 | HRGMv2_3870_2_91 | 136516 | 138357 | + | 3.A.1.106.2 |
| CAZyme | HRGMv2_3870_2 | HRGMv2_3870_2_92 | 138428 | 139321 | - | GT2 |
Gene ID: HRGMv2_3870_2_80
Type: TC
Location: 124695 - 125690 (-)
Type: TC
Location: 124695 - 125690 (-)
Gene ID: HRGMv2_3870_2_81
Type: sulfatase
Location: 125828 - 127633 (+)
Type: sulfatase
Location: 125828 - 127633 (+)
Gene ID: HRGMv2_3870_2_82
Type: CAZyme
Location: 127687 - 128655 (-)
Type: CAZyme
Location: 127687 - 128655 (-)
Gene ID: HRGMv2_3870_2_83
Type: pfam
Location: 128652 - 129050 (-)
Type: pfam
Location: 128652 - 129050 (-)
Gene ID: HRGMv2_3870_2_84
Type: CAZyme
Location: 129040 - 130761 (-)
Type: CAZyme
Location: 129040 - 130761 (-)
Gene ID: HRGMv2_3870_2_85
Type: pfam
Location: 130790 - 131803 (-)
Type: pfam
Location: 130790 - 131803 (-)
Gene ID: HRGMv2_3870_2_86
Type: CAZyme
Location: 131912 - 132838 (+)
Type: CAZyme
Location: 131912 - 132838 (+)
Gene ID: HRGMv2_3870_2_87
Type: CAZyme
Location: 132888 - 133784 (+)
Type: CAZyme
Location: 132888 - 133784 (+)
Gene ID: HRGMv2_3870_2_88
Type: CAZyme
Location: 133861 - 134871 (-)
Type: CAZyme
Location: 133861 - 134871 (-)
Gene ID: HRGMv2_3870_2_89
Type: CAZyme
Location: 135259 - 135468 (-)
Type: CAZyme
Location: 135259 - 135468 (-)
Gene ID: HRGMv2_3870_2_90
Type: pfam
Location: 135465 - 136376 (-)
Type: pfam
Location: 135465 - 136376 (-)
Gene ID: HRGMv2_3870_2_91
Type: TC
Location: 136516 - 138357 (+)
Type: TC
Location: 136516 - 138357 (+)
Gene ID: HRGMv2_3870_2_92
Type: CAZyme
Location: 138428 - 139321 (-)
Type: CAZyme
Location: 138428 - 139321 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.