dbCAN Logo

Cluster: HRGMv2_3870_CGC59

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3870_47 HRGMv2_3870_47_11 9786 10502 + 9.B.186.1.3
CAZyme HRGMv2_3870_47 HRGMv2_3870_47_12 10592 11284 + GT51
TC HRGMv2_3870_47 HRGMv2_3870_47_13 11292 11930 - 1.A.62.2.1
TC HRGMv2_3870_47 HRGMv2_3870_47_14 11941 13398 - 9.B.168.1.2
peptidase HRGMv2_3870_47 HRGMv2_3870_47_15 13736 15334 + C26.964
TC HRGMv2_3870_47 HRGMv2_3870_47_16 15364 17220 + 2.A.9.3.1
Gene ID: HRGMv2_3870_47_11
Type: TC
Location: 9786 - 10502 (+)
Gene ID: HRGMv2_3870_47_12
Type: CAZyme
Location: 10592 - 11284 (+)
Gene ID: HRGMv2_3870_47_13
Type: TC
Location: 11292 - 11930 (-)
Gene ID: HRGMv2_3870_47_14
Type: TC
Location: 11941 - 13398 (-)
Gene ID: HRGMv2_3870_47_15
Type: peptidase
Location: 13736 - 15334 (+)
Gene ID: HRGMv2_3870_47_16
Type: TC
Location: 15364 - 17220 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3870_47_12 vegetarian > vegan 1.01466 0.04511
HRGMv2_3870_47_13 vegetarian > vegan 1.11413 0.04511

🧭 Explore Read Mapping of CGC

← Back to Cluster List