Cluster: HRGMv2_3870_CGC43
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_3870
- CGC Family ID: CGCFAM_05942
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3870_21 | HRGMv2_3870_21_18 | 21071 | 24655 | - | GH2 |
| CAZyme | HRGMv2_3870_21 | HRGMv2_3870_21_19 | 24670 | 26670 | - | GH20 |
| NULL(UNKNOWN) | HRGMv2_3870_21 | HRGMv2_3870_21_20 | 26908 | 29136 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_3870_21 | HRGMv2_3870_21_21 | 29172 | 31364 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3870_21 | HRGMv2_3870_21_22 | 31439 | 33760 | - | GH20 |
| CAZyme | HRGMv2_3870_21 | HRGMv2_3870_21_23 | 33776 | 35725 | - | GH16_3 |
| TC | HRGMv2_3870_21 | HRGMv2_3870_21_24 | 35762 | 37549 | - | 8.A.46.1.4 |
| TC | HRGMv2_3870_21 | HRGMv2_3870_21_25 | 37562 | 40882 | - | 1.B.14.6.1 |
| TF | HRGMv2_3870_21 | HRGMv2_3870_21_26 | 41093 | 45049 | + | HTH_AraC |
| CAZyme | HRGMv2_3870_21 | HRGMv2_3870_21_27 | 45096 | 47852 | - | GH92 |
| pfam | HRGMv2_3870_21 | HRGMv2_3870_21_28 | 47910 | 49136 | - | DUF218 |
| pfam | HRGMv2_3870_21 | HRGMv2_3870_21_29 | 49133 | 50026 | - | GDPD | DUF4996 |
| TC | HRGMv2_3870_21 | HRGMv2_3870_21_30 | 50055 | 51620 | - | 8.A.46.1.2 |
| TC | HRGMv2_3870_21 | HRGMv2_3870_21_31 | 51633 | 54893 | - | 1.B.14.6.1 |
| TC | HRGMv2_3870_21 | HRGMv2_3870_21_32 | 55347 | 58367 | + | 1.B.14.6.1 |
Gene ID: HRGMv2_3870_21_18
Type: CAZyme
Location: 21071 - 24655 (-)
Type: CAZyme
Location: 21071 - 24655 (-)
Gene ID: HRGMv2_3870_21_19
Type: CAZyme
Location: 24670 - 26670 (-)
Type: CAZyme
Location: 24670 - 26670 (-)
Gene ID: HRGMv2_3870_21_20
Type:
Location: 26908 - 29136 (-)
Type:
Location: 26908 - 29136 (-)
Gene ID: HRGMv2_3870_21_21
Type:
Location: 29172 - 31364 (-)
Type:
Location: 29172 - 31364 (-)
Gene ID: HRGMv2_3870_21_22
Type: CAZyme
Location: 31439 - 33760 (-)
Type: CAZyme
Location: 31439 - 33760 (-)
Gene ID: HRGMv2_3870_21_23
Type: CAZyme
Location: 33776 - 35725 (-)
Type: CAZyme
Location: 33776 - 35725 (-)
Gene ID: HRGMv2_3870_21_24
Type: TC
Location: 35762 - 37549 (-)
Type: TC
Location: 35762 - 37549 (-)
Gene ID: HRGMv2_3870_21_25
Type: TC
Location: 37562 - 40882 (-)
Type: TC
Location: 37562 - 40882 (-)
Gene ID: HRGMv2_3870_21_26
Type: TF
Location: 41093 - 45049 (+)
Type: TF
Location: 41093 - 45049 (+)
Gene ID: HRGMv2_3870_21_27
Type: CAZyme
Location: 45096 - 47852 (-)
Type: CAZyme
Location: 45096 - 47852 (-)
Gene ID: HRGMv2_3870_21_28
Type: pfam
Location: 47910 - 49136 (-)
Type: pfam
Location: 47910 - 49136 (-)
Gene ID: HRGMv2_3870_21_29
Type: pfam
Location: 49133 - 50026 (-)
Type: pfam
Location: 49133 - 50026 (-)
Gene ID: HRGMv2_3870_21_30
Type: TC
Location: 50055 - 51620 (-)
Type: TC
Location: 50055 - 51620 (-)
Gene ID: HRGMv2_3870_21_31
Type: TC
Location: 51633 - 54893 (-)
Type: TC
Location: 51633 - 54893 (-)
Gene ID: HRGMv2_3870_21_32
Type: TC
Location: 55347 - 58367 (+)
Type: TC
Location: 55347 - 58367 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3870_21_19 | vegetarian > vegan | 1.79438 | 0.03133 |