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Cluster: HRGMv2_3870_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3870_20 HRGMv2_3870_20_2 1037 2077 + 1.A.35.3.2
STP HRGMv2_3870_20 HRGMv2_3870_20_3 2109 2759 + HhH-GPD
TC HRGMv2_3870_20 HRGMv2_3870_20_4 2964 6035 + 1.B.14.6.1
pfam HRGMv2_3870_20 HRGMv2_3870_20_5 6048 7604 + SusD_RagB | SusD-like_3
sulfatase HRGMv2_3870_20 HRGMv2_3870_20_6 7690 9261 + S1_4
CAZyme HRGMv2_3870_20 HRGMv2_3870_20_7 9280 11964 + GH2
CAZyme HRGMv2_3870_20 HRGMv2_3870_20_8 11989 13545 + GH20
TF HRGMv2_3870_20 HRGMv2_3870_20_9 13533 13880 - MerR
TC HRGMv2_3870_20 HRGMv2_3870_20_10 13895 14860 - 1.A.34.1.3
pfam HRGMv2_3870_20 HRGMv2_3870_20_11 14994 17612 + tRNA-synt_2c | DHHA1 | tRNA_SAD
TC HRGMv2_3870_20 HRGMv2_3870_20_12 17815 19155 + 2.A.66.1.13
TF HRGMv2_3870_20 HRGMv2_3870_20_13 19164 20072 - HTH_AraC
pfam HRGMv2_3870_20 HRGMv2_3870_20_14 20236 21486 + OEP | OEP
TC HRGMv2_3870_20 HRGMv2_3870_20_15 21522 22412 + 3.A.1.105.4
TC HRGMv2_3870_20 HRGMv2_3870_20_16 22426 23916 + 3.A.1.105.15
TC HRGMv2_3870_20 HRGMv2_3870_20_17 23913 25034 + 3.A.1.105.4
TC HRGMv2_3870_20 HRGMv2_3870_20_18 25046 26107 + 3.A.1.105.16
Gene ID: HRGMv2_3870_20_2
Type: TC
Location: 1037 - 2077 (+)
Gene ID: HRGMv2_3870_20_3
Type: STP
Location: 2109 - 2759 (+)
Gene ID: HRGMv2_3870_20_4
Type: TC
Location: 2964 - 6035 (+)
Gene ID: HRGMv2_3870_20_5
Type: pfam
Location: 6048 - 7604 (+)
Gene ID: HRGMv2_3870_20_6
Type: sulfatase
Location: 7690 - 9261 (+)
Gene ID: HRGMv2_3870_20_7
Type: CAZyme
Location: 9280 - 11964 (+)
Gene ID: HRGMv2_3870_20_8
Type: CAZyme
Location: 11989 - 13545 (+)
Gene ID: HRGMv2_3870_20_9
Type: TF
Location: 13533 - 13880 (-)
Gene ID: HRGMv2_3870_20_10
Type: TC
Location: 13895 - 14860 (-)
Gene ID: HRGMv2_3870_20_11
Type: pfam
Location: 14994 - 17612 (+)
Gene ID: HRGMv2_3870_20_12
Type: TC
Location: 17815 - 19155 (+)
Gene ID: HRGMv2_3870_20_13
Type: TF
Location: 19164 - 20072 (-)
Gene ID: HRGMv2_3870_20_14
Type: pfam
Location: 20236 - 21486 (+)
Gene ID: HRGMv2_3870_20_15
Type: TC
Location: 21522 - 22412 (+)
Gene ID: HRGMv2_3870_20_16
Type: TC
Location: 22426 - 23916 (+)
Gene ID: HRGMv2_3870_20_17
Type: TC
Location: 23913 - 25034 (+)
Gene ID: HRGMv2_3870_20_18
Type: TC
Location: 25046 - 26107 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3870_20_18 vegetarian > vegan 1.26837 0.03506

🧭 Explore Read Mapping of CGC

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