Cluster: HRGMv2_3870_CGC34
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_3870
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3870_15 | HRGMv2_3870_15_10 | 11203 | 14190 | + | 1.B.14.6.1 |
| TC | HRGMv2_3870_15 | HRGMv2_3870_15_11 | 14201 | 15991 | + | 8.A.46.1.6 |
| CAZyme | HRGMv2_3870_15 | HRGMv2_3870_15_12 | 16132 | 18759 | + | GH3 |
| TF | HRGMv2_3870_15 | HRGMv2_3870_15_13 | 18853 | 19722 | + | HTH_AraC | HTH_AraC |
| pfam | HRGMv2_3870_15 | HRGMv2_3870_15_14 | 19812 | 21236 | + | Arabinose_Iso_C |
| CAZyme | HRGMv2_3870_15 | HRGMv2_3870_15_15 | 21278 | 22804 | + | GH29 |
| CAZyme | HRGMv2_3870_15 | HRGMv2_3870_15_16 | 22833 | 25319 | + | GH95 |
| CAZyme | HRGMv2_3870_15 | HRGMv2_3870_15_17 | 25316 | 27613 | + | CBM67 | GH78 |
| CAZyme | HRGMv2_3870_15 | HRGMv2_3870_15_18 | 27628 | 30405 | + | CBM67 | GH78 |
| CAZyme | HRGMv2_3870_15 | HRGMv2_3870_15_19 | 30421 | 31932 | + | GH29 |
| CAZyme | HRGMv2_3870_15 | HRGMv2_3870_15_20 | 31942 | 34083 | + | GH31_14 |
| TC | HRGMv2_3870_15 | HRGMv2_3870_15_21 | 34184 | 37345 | + | 1.B.14.6.1 |
Gene ID: HRGMv2_3870_15_10
Type: TC
Location: 11203 - 14190 (+)
Type: TC
Location: 11203 - 14190 (+)
Gene ID: HRGMv2_3870_15_11
Type: TC
Location: 14201 - 15991 (+)
Type: TC
Location: 14201 - 15991 (+)
Gene ID: HRGMv2_3870_15_12
Type: CAZyme
Location: 16132 - 18759 (+)
Type: CAZyme
Location: 16132 - 18759 (+)
Gene ID: HRGMv2_3870_15_13
Type: TF
Location: 18853 - 19722 (+)
Type: TF
Location: 18853 - 19722 (+)
Gene ID: HRGMv2_3870_15_14
Type: pfam
Location: 19812 - 21236 (+)
Type: pfam
Location: 19812 - 21236 (+)
Gene ID: HRGMv2_3870_15_15
Type: CAZyme
Location: 21278 - 22804 (+)
Type: CAZyme
Location: 21278 - 22804 (+)
Gene ID: HRGMv2_3870_15_16
Type: CAZyme
Location: 22833 - 25319 (+)
Type: CAZyme
Location: 22833 - 25319 (+)
Gene ID: HRGMv2_3870_15_17
Type: CAZyme
Location: 25316 - 27613 (+)
Type: CAZyme
Location: 25316 - 27613 (+)
Gene ID: HRGMv2_3870_15_18
Type: CAZyme
Location: 27628 - 30405 (+)
Type: CAZyme
Location: 27628 - 30405 (+)
Gene ID: HRGMv2_3870_15_19
Type: CAZyme
Location: 30421 - 31932 (+)
Type: CAZyme
Location: 30421 - 31932 (+)
Gene ID: HRGMv2_3870_15_20
Type: CAZyme
Location: 31942 - 34083 (+)
Type: CAZyme
Location: 31942 - 34083 (+)
Gene ID: HRGMv2_3870_15_21
Type: TC
Location: 34184 - 37345 (+)
Type: TC
Location: 34184 - 37345 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.