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Cluster: HRGMv2_3870_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3870_14 HRGMv2_3870_14_70 80899 82842 + GH97
CAZyme HRGMv2_3870_14 HRGMv2_3870_14_71 82870 84807 + GH146
pfam HRGMv2_3870_14 HRGMv2_3870_14_72 84826 85857 + Mfa_like_1
pfam HRGMv2_3870_14 HRGMv2_3870_14_73 85888 87507 + Mfa_like_1
CAZyme HRGMv2_3870_14 HRGMv2_3870_14_74 87696 89972 + PL40
peptidase HRGMv2_3870_14 HRGMv2_3870_14_75 89959 91077 + S12.UPW
NULL(UNKNOWN) HRGMv2_3870_14 HRGMv2_3870_14_76 91074 92675 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3870_14 HRGMv2_3870_14_77 92797 93639 - 1.A.30.1.5
Gene ID: HRGMv2_3870_14_70
Type: CAZyme
Location: 80899 - 82842 (+)
Gene ID: HRGMv2_3870_14_71
Type: CAZyme
Location: 82870 - 84807 (+)
Gene ID: HRGMv2_3870_14_72
Type: pfam
Location: 84826 - 85857 (+)
Gene ID: HRGMv2_3870_14_73
Type: pfam
Location: 85888 - 87507 (+)
Gene ID: HRGMv2_3870_14_74
Type: CAZyme
Location: 87696 - 89972 (+)
Gene ID: HRGMv2_3870_14_75
Type: peptidase
Location: 89959 - 91077 (+)
Gene ID: HRGMv2_3870_14_76
Type:
Location: 91074 - 92675 (+)
Gene ID: HRGMv2_3870_14_77
Type: TC
Location: 92797 - 93639 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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