Cluster: HRGMv2_3870_CGC32
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3870
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3870_14 | HRGMv2_3870_14_39 | 41095 | 41967 | + | 2.A.7.3.2 |
| NULL(UNKNOWN) | HRGMv2_3870_14 | HRGMv2_3870_14_40 | 42094 | 43329 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3870_14 | HRGMv2_3870_14_41 | 43355 | 44968 | + | 1.B.9.4.2 |
| pfam | HRGMv2_3870_14 | HRGMv2_3870_14_42 | 45033 | 46175 | - | DUF4421 |
| CAZyme | HRGMv2_3870_14 | HRGMv2_3870_14_43 | 46210 | 47199 | - | GH179 |
| STP | HRGMv2_3870_14 | HRGMv2_3870_14_44 | 47212 | 48030 | - | SBP_bac_3 |
| TC | HRGMv2_3870_14 | HRGMv2_3870_14_45 | 48036 | 50123 | - | 1.B.14.15.2 |
Gene ID: HRGMv2_3870_14_39
Type: TC
Location: 41095 - 41967 (+)
Type: TC
Location: 41095 - 41967 (+)
Gene ID: HRGMv2_3870_14_40
Type:
Location: 42094 - 43329 (+)
Type:
Location: 42094 - 43329 (+)
Gene ID: HRGMv2_3870_14_41
Type: TC
Location: 43355 - 44968 (+)
Type: TC
Location: 43355 - 44968 (+)
Gene ID: HRGMv2_3870_14_42
Type: pfam
Location: 45033 - 46175 (-)
Type: pfam
Location: 45033 - 46175 (-)
Gene ID: HRGMv2_3870_14_43
Type: CAZyme
Location: 46210 - 47199 (-)
Type: CAZyme
Location: 46210 - 47199 (-)
Gene ID: HRGMv2_3870_14_44
Type: STP
Location: 47212 - 48030 (-)
Type: STP
Location: 47212 - 48030 (-)
Gene ID: HRGMv2_3870_14_45
Type: TC
Location: 48036 - 50123 (-)
Type: TC
Location: 48036 - 50123 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.